PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32374.5 Da PI: 4.4247 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.7 | 1.2e-19 | 33 | 115 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +l++p f++ ++g+ + +l+d+ grsW+v + +k+++ +++ +GW +Fv++n+Lk g+f++F+++g+s+f +vk++ XP_009613984.1 33 PQICNPQLRIPPAFLKFFNGD--IPANSMLQDLAGRSWKVVV--EKNDNDFFFMGGWPDFVRDNNLKFGEFLTFSYVGNSNF--YVKIY 115 55566789*******988666..45568**************..**********************************9999..88886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-25 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-21 | 23 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.15E-19 | 25 | 115 | No hit | No description |
SMART | SM01019 | 1.9E-18 | 27 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-18 | 35 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 40 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MSQRKKVKDK MVTSIEQVTI PDHLPEFFKI YHPQICNPQL RIPPAFLKFF NGDIPANSML 60 QDLAGRSWKV VVEKNDNDFF FMGGWPDFVR DNNLKFGEFL TFSYVGNSNF YVKIYGINGS 120 LKWDVTAIKE PELHPLDEEI VQEIGTAAPP ADQALNGSGD LVVYAPSFDI VIKPSYIRKK 180 RLSNESLVDV DPVPVTISPR ENLQTDDNQV DNEDDDHVQN DQYDVVDAPV QGDVVGQQPT 240 TIDALKSSLR RSTGKKIPLF RYPPIEYVLL IDMGESKSFE EAMDSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 4e-13 | 26 | 118 | 10 | 102 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613984.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g06220-like | ||||
Refseq | XP_009613985.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g06220-like | ||||
TrEMBL | A0A1S4DDC8 | 1e-122 | A0A1S4DDC8_TOBAC; B3 domain-containing protein At3g06220-like isoform X1 | ||||
STRING | XP_009613984.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 5e-18 | B3 family protein |