PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009609295.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 329aa MW: 36968.5 Da PI: 7.5861

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5e-54	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_009609295.1 23 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-DIIAEVDLYKFDPWELPAKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTA 116 79**************************.99***********99999************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ XP_009609295.1 117 gGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRI 150 77788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-65	19	185	IPR003441	NAC domain
PROSITE profile	PS51005	62.357	23	184	IPR003441	NAC domain
Pfam	PF02365	4.7E-28	24	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MESTTDSSTG NPPLQPPPPQ PQLPPGFRFH PTDEELVVHY LKKKAASVPL PVDIIAEVDL 60 YKFDPWELPA KANFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPVLTAGGNQ 120 KVGVKKALVF YGGKPPKGVK TNWIMHEYRI TENKTNNKPP GCDIANRKGS LRLDDWVLCR 180 IYKKNNTQRP IDHHERDDMN DMMGSSIPTC IATSISPFEQ NMYEGIINNN TSNMINNNVG 240 SISSSVLPPK QPLPAGLYWN EDHNTSSPSA KRFLAENSLD DELNMNITRP DEQNSFLSQL 300 PQNQVLGSLS DGVVFRQPYN QVTGMNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-76	17	187	11	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-76	17	187	11	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-76	17	187	11	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-76	17	187	11	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-76	17	187	14	171	NAC domain-containing protein 19
3swm_B	3e-76	17	187	14	171	NAC domain-containing protein 19
3swm_C	3e-76	17	187	14	171	NAC domain-containing protein 19
3swm_D	3e-76	17	187	14	171	NAC domain-containing protein 19
3swp_A	3e-76	17	187	14	171	NAC domain-containing protein 19
3swp_B	3e-76	17	187	14	171	NAC domain-containing protein 19
3swp_C	3e-76	17	187	14	171	NAC domain-containing protein 19
3swp_D	3e-76	17	187	14	171	NAC domain-containing protein 19
4dul_A	2e-76	17	187	11	168	NAC domain-containing protein 19
4dul_B	2e-76	17	187	11	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609295.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-112	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1S3X9V9	0.0	A0A1S3X9V9_TOBAC; NAC transcription factor 56-like
STRING	XP_009609295.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-111	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]