PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009609087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 354aa MW: 39794.2 Da PI: 7.5496 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009609087.1 147 YECKTCNRTFPSFQALGGHRASH 169 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 234 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_009609087.1 234 HTCSYCGAEFNSGQALGGHMRRH 256 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.12E-8 | 146 | 169 | No hit | No description |
Pfam | PF13912 | 3.3E-13 | 146 | 171 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 147 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.843 | 147 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 149 | 169 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.12E-8 | 229 | 256 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 234 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0084 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.4E-12 | 234 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPVPFTLVAH SSTGDNGGDR IINNNNNNNI 60 SQSLVTSAEN FPNDDLPTEE EEETAKCLIL LSQGGQPYRQ RFIESPPKKL FDLFNDDMGL 120 YQSKFNSKRY VETTNIGNGA RAGTYVYECK TCNRTFPSFQ ALGGHRASHK KPKPLTIEPK 180 KAFFYFSDQD EPSPTTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG 240 AEFNSGQALG GHMRRHRGGA NTSLCLSPLS TQAFSFEETP NNLKKPRNIG LSLDLNLPAP 300 EDQNHESRNL QYPPKYPIAI EQEQDQEQTQ KQQQQQEQTA LVLSTTPQLI DCHY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609087.1 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A1S3ZY08 | 0.0 | A0A1S3ZY08_TOBAC; zinc finger protein ZAT5-like | ||||
STRING | XP_009609087.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4015 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-54 | C2H2 family protein |