PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009608710.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 136aa MW: 15695.1 Da PI: 10.22

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009608710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.5e-08	17	52	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ +++a +++G++ W+++a+ + Rt++++ XP_009608710.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52 5***************99.******9.8999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.65E-11	11	62	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-4	14	62	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-7	17	53	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-5	17	58	IPR009057	Homeodomain-like
CDD	cd00167	1.33E-5	18	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM 60 AYLSLPEGTA SAVGLIALIS DHYCYLLWPR CRTRFRNSSN GSRAWCRRNH TPSVLGWSYQ 120 RVDGRPAVIA SGRMLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461655.1	3e-99	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
Swissprot	Q6A332	6e-32	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3ZB19	6e-98	A0A1S3ZB19_TOBAC; protein ALWAYS EARLY 3-like isoform X3
STRING	XP_009797177.1	2e-48	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	3e-34	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]