PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605879.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26153.8 Da    PI: 10.0446
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrngi+KKA+EL vLCda+++++++sst k++ey s
  XP_009605879.1  9 KKIENSTNRQVTYSKRRNGIIKKAKELTVLCDAKISLLMLSSTRKFHEYTS 59
                    68***********************************************75 PP
2K-box81.61.9e-2771168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq++ g++ +++++e++q++l++Lk+ +++L+re+R++ Ged++ L+l eL +L++++ +sl +iR++K++++++q+++ +kk k+l+e++ +L 
  XP_009605879.1  71 YQRTLGVDIWSTHYEKMQENLKRLKEINNKLRREIRQRTGEDMSGLNLLELCHLQENISESLAEIRERKYHVIKTQTDTFRKKVKNLEEQHGNLV 165
                     67788899***********************************************************************************9997 PP

           K-box  96 kkl 98 
                       l
  XP_009605879.1 166 LDL 168
                     665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-35295IPR002100Transcription factor, MADS-box
CDDcd002652.95E-36280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-1982165IPR002487Transcription factor, K-box
PROSITE profilePS5129714.87384174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKK IENSTNRQVT YSKRRNGIIK KAKELTVLCD AKISLLMLSS TRKFHEYTSP  60
NTTQKKMIDQ YQRTLGVDIW STHYEKMQEN LKRLKEINNK LRREIRQRTG EDMSGLNLLE  120
LCHLQENISE SLAEIRERKY HVIKTQTDTF RKKVKNLEEQ HGNLVLDLEA KSEDPKYGVV  180
ENEGEYNSAM AFANGAHNLY AFRLQSLHPN LQNGGEFGSR NLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-15161161MEF2C
5f28_B9e-15161161MEF2C
5f28_C9e-15161161MEF2C
5f28_D9e-15161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5394140.0DQ539414.1 Solandra maxima TM6 (TM6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605879.11e-166PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-120TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1S4AYJ91e-164A0A1S4AYJ9_TOBAC; floral homeotic protein DEFICIENS-like
STRINGXP_009605879.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]