PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009605047.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1014aa MW: 111714 Da PI: 5.5501

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009605047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	614	665	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_009605047.1 614 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 665 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	599	685	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	617	665	IPR003035	RWP-RK domain
PROSITE profile	PS51745	23.809	919	1001	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-25	919	1000	No hit	No description
SuperFamily	SSF54277	4.25E-22	919	1005	No hit	No description
SMART	SM00666	8.2E-23	919	1001	IPR000270	PB1 domain
CDD	cd06407	7.73E-38	920	1000	No hit	No description
Pfam	PF00564	2.2E-16	920	1000	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence Send to blast
MSEPEEEMNH MFRSKPKDFL PRPPPTQHTV AAENQNQREP SLMMDLDLDL DASWSFDQIF 60 AAAAASNNPM SPFLVSTTAS EQPCSPLWAF SDENEDNKPS TGNAISAASL RLSSYPRFLT 120 YTGDHEAAAE TLSVADDKKR IPLPIMGLTP LDYLDGSCII KERMTQALRY LKESTGERVL 180 AQVWAPVKNG GRYMLTTSGQ PFVLDPDCNG LHQYRMVSLM YMFAVDGETD GVLGLPGRVY 240 RKKLPEWTPN VQYYSSKEFP RLNHALHYNV RGTLALPVFE PSGQSCVGVL EIIMTSQKIN 300 YAPEVDRVCK ALEAVNLKSS EILDHQNTQI CNEGRQNALV EILEILTAVC ETYKLPLAQT 360 WVPCRHRSVL ADGGGLKKSC SSFDGSCMGQ VCMSTTDVSF YVVDAHMWGF REACAEHHLQ 420 KGQGVAGRAY ASQKSCFCED IRLFCKTEYP LVHYARLFGL SSCFAICLRS TYTGNDDYIL 480 EFFLPPNDGD YNDQLALLNS LLLTMKQHFR SLRVASGEEL EHDWGSVEVI KASMEDKLGS 540 RLESVPTTKS PPQPASVVNG RVPPDLMEEQ QAPVELNVAK VAEGVNGTAE AHNHASFSEN 600 KGTGKKSERK RGKAEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR 660 KINKVNRSLS KLKRVIESVQ GADGTFSLTS LAPNSLPVAV GSISWPAGMN GSPCNASEYH 720 EEKNELSNHG IPGSHEEAEP SNQMMESRII GNEELSPKQN GFVREGSHRS RTGSGSREES 780 AGTPTSHGSC QGSPFHANES SPQNELVNSP TQELSVKVGG SSEPARQTTG EINLSTAFLM 840 PGPYIPEHTQ QLFGGMLVED AGSSHDLRNL CPAGDAMFDD RVPEYSWTNP PCSNGIAKDQ 900 VSLPAEKMPQ FSTRPEVMSI TIKATYREDI IRFRLLLSSG IFMLKEEVAK RLKLEVGTFD 960 IKYLDDDHEW VLIACDADLQ ECVDISRSSG SNVVRLLVHD IMPNLGSSCE SSGE

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence Send to blast

MSEPEEEMNH MFRSKPKDFL PRPPPTQHTV AAENQNQREP SLMMDLDLDL DASWSFDQIF  60
AAAAASNNPM SPFLVSTTAS EQPCSPLWAF SDENEDNKPS TGNAISAASL RLSSYPRFLT  120
YTGDHEAAAE TLSVADDKKR IPLPIMGLTP LDYLDGSCII KERMTQALRY LKESTGERVL  180
AQVWAPVKNG GRYMLTTSGQ PFVLDPDCNG LHQYRMVSLM YMFAVDGETD GVLGLPGRVY  240
RKKLPEWTPN VQYYSSKEFP RLNHALHYNV RGTLALPVFE PSGQSCVGVL EIIMTSQKIN  300
YAPEVDRVCK ALEAVNLKSS EILDHQNTQI CNEGRQNALV EILEILTAVC ETYKLPLAQT  360
WVPCRHRSVL ADGGGLKKSC SSFDGSCMGQ VCMSTTDVSF YVVDAHMWGF REACAEHHLQ  420
KGQGVAGRAY ASQKSCFCED IRLFCKTEYP LVHYARLFGL SSCFAICLRS TYTGNDDYIL  480
EFFLPPNDGD YNDQLALLNS LLLTMKQHFR SLRVASGEEL EHDWGSVEVI KASMEDKLGS  540
RLESVPTTKS PPQPASVVNG RVPPDLMEEQ QAPVELNVAK VAEGVNGTAE AHNHASFSEN  600
KGTGKKSERK RGKAEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR  660
KINKVNRSLS KLKRVIESVQ GADGTFSLTS LAPNSLPVAV GSISWPAGMN GSPCNASEYH  720
EEKNELSNHG IPGSHEEAEP SNQMMESRII GNEELSPKQN GFVREGSHRS RTGSGSREES  780
AGTPTSHGSC QGSPFHANES SPQNELVNSP TQELSVKVGG SSEPARQTTG EINLSTAFLM  840
PGPYIPEHTQ QLFGGMLVED AGSSHDLRNL CPAGDAMFDD RVPEYSWTNP PCSNGIAKDQ  900
VSLPAEKMPQ FSTRPEVMSI TIKATYREDI IRFRLLLSSG IFMLKEEVAK RLKLEVGTFD  960
IKYLDDDHEW VLIACDADLQ ECVDISRSSG SNVVRLLVHD IMPNLGSSCE SSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605047.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3ZVF3	0.0	A0A1S3ZVF3_TOBAC; protein NLP6-like
STRING	XP_009605047.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]