PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009599183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 153aa MW: 17317.7 Da PI: 10.068 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.1 | 1.3e-19 | 16 | 61 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ien+ nrqvtfskRrng++KKA+EL + +ae+++i+f + k y XP_009599183.1 16 KIENQNNRQVTFSKRRNGVFKKANELAAMIGAEICIIVFPPGSKPY 61 79************************************98776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.432 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-23 | 10 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-22 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSTRLIKGSK SVRLAKIENQ NNRQVTFSKR RNGVFKKANE LAAMIGAEIC IIVFPPGSKP 60 YSFGHPNVNE TIDKYVGEET PPSPSSPGID GNKLKNTNKN LERQQEWFRG PIDKMNYTEA 120 SMLKEGLEYL LLKVKNYGTE RGYGYENGKW KAE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599183.1 | 1e-110 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_016456682.1 | 1e-110 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S3YXW1 | 1e-108 | A0A1S3YXW1_TOBAC; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009599183.1 | 1e-109 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24145 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-26 | AGAMOUS-like 61 |