PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 472aa MW: 53296.8 Da PI: 9.8328 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 24.6 | 5.1e-08 | 370 | 456 | 13 | 99 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt.lkksdiaaavtrtdifdflvdivprd 99 +++ + ++P ri++i+k ++ ++s ea ++ ka e f le+ r + +r+ + ++++v++ + fdfl + vp++ XP_009598519.1 370 KSESALYQFPHNRIHRIIKDENSDMRMSQEATFVVNKATEKF-LEVFCREAYACSFLDRNNyVGYDHLSSVVSKRHRFDFLSEFVPQK 456 45556789***********99988889**************9.68888877777766666516677799****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.1E-15 | 357 | 455 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-9 | 377 | 440 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.9E-17 | 378 | 455 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MPKTKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE ENDGVENVQE EYVRDTDEEE 60 EEEKAAEGKA GNNTNRRGRN EKLEVQKKVY RRKGKKGDEN RENEAKKSKQ SESENLKIYM 120 RKKKVKNGKE KEEEEQNVAK TAKREKDNTE KKMKEKNEKG RIGKNAKSNG DSTRGCKIEN 180 KKKKNEEEGG QKVAKKAKSN GDSSCGGKNE NKKKKREEEG GQKVAKKAKS NGDSSRGSEN 240 EKEESKKKKK RAEEGEGGGG GGGGGGKATK KAKSNGDSSR SKKEEKKMKK TENKKEGNEE 300 AEEKGVKRAQ SNGSTSRATK EKMKREKEEN EGKASNGKVE NGARCNGDTP LKKLKAKKKR 360 EDDEEEEHEK SESALYQFPH NRIHRIIKDE NSDMRMSQEA TFVVNKATEK FLEVFCREAY 420 ACSFLDRNNY VGYDHLSSVV SKRHRFDFLS EFVPQKVRAV DALAEIPKAE ET |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598519.1 | 0.0 | PREDICTED: ribosome-binding protein 1 isoform X1 | ||||
TrEMBL | A0A1S4B6J2 | 0.0 | A0A1S4B6J2_TOBAC; ABC transporter F family member 4-like | ||||
STRING | XP_009598519.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9304 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-24 | nuclear factor Y, subunit C10 |