PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_009595580.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 1138aa MW: 127313 Da PI: 8.7846

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.7e-08	44	79	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a+ + Rt +++ XP_009595580.1 44 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 79 7***************99.****998.7887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-9	39	88	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-4	41	89	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-6	44	80	IPR001005	SANT/Myb domain
CDD	cd00167	7.23E-6	44	79	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-4	44	79	IPR009057	Homeodomain-like
Pfam	PF06584	1.8E-33	632	732	IPR033471	DIRP domain
SMART	SM01135	2.5E-58	632	733	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1138 aa Download sequence Send to blast
MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY 60 GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ 120 ESNEDAGTSR KPQKRARGKV QPNISKASEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK 180 RTPRFPVSFS CGNPKGEKYF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP 240 NRRTDSAMSS PVETAERKRV KIGMGNAKLL SNEVDEEEGS MEADTGELLR YKTDLVETGT 300 FGRTAQKGRR PYGKKLEIDD SGANHFDDIK EACSGTEEGQ ILGVVRGKLE MEATYEKNSR 360 TSLQGPRKRS KKVLFSRDES SAFDALQTLA DMSLMMPTAE NEDESMIQFN DEIDDHVDES 420 GSLEAVPANR QRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR 480 AHKAMSSKAR KTEGHVNNNN VTGSEEAEAK EASKKSTNKG KRSYRSASPK LIKDQEPSSC 540 ADPRTERSDS AQSAAEIPVA NQVNLPTKVR SRRKMDLKKP QRQKDLKIPD KSLDDTSASF 600 TALHDRAFSL KEKISNCLSN HQVRRWCTYE WFYSAIDYPW FAKRDFVEYL NHVGLGHVPR 660 LTRVEWGVIR SSLGKPRRFS EQFLNEEKEK LNQYRESVRT HYTELREGTR EGLPTDLARP 720 LSVGQRVIAI HPKTREIHDG SVLTVDRSRC RVQFDRPELG VEFVMDIDCM PLNPFENMPT 780 LLTRRADAVD KFFESFNELK VNARANEYMK FPACDNMENG NVFSHFSPPS HPISDLLKQT 840 KVASAEVDMQ SRSGVMETAT YQSMAYSKSS GVAQIQAKEA DVQALAELAR ALDKKEAVVS 900 ELRRMNDDVL ENQKSNDCSL KDSEPFKKQY AAMLIQLNEV NEEVSCALYR LRQRNTYQGS 960 IPLAFPRPVP NFADPSTLST FDRCTSQPQE SGFLVNEIIE SSKIKARTMV DAAVQAMLSL 1020 TDRDNTTEKI EEAIGFVNDR IPLDDSCMPT QPTDPKSKNM SDKNEAEIPS ELITKCVATL 1080 LMIQKCSERQ FPPADVAKVL DSAVASLQPC CSQNFPIYAE IQQCMGIIRN QILALVPM

Sequence ? help Back to Top

Protein Sequence Length: 1138 aa Download sequence Send to blast

MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY  60
GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ  120
ESNEDAGTSR KPQKRARGKV QPNISKASEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK  180
RTPRFPVSFS CGNPKGEKYF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP  240
NRRTDSAMSS PVETAERKRV KIGMGNAKLL SNEVDEEEGS MEADTGELLR YKTDLVETGT  300
FGRTAQKGRR PYGKKLEIDD SGANHFDDIK EACSGTEEGQ ILGVVRGKLE MEATYEKNSR  360
TSLQGPRKRS KKVLFSRDES SAFDALQTLA DMSLMMPTAE NEDESMIQFN DEIDDHVDES  420
GSLEAVPANR QRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR  480
AHKAMSSKAR KTEGHVNNNN VTGSEEAEAK EASKKSTNKG KRSYRSASPK LIKDQEPSSC  540
ADPRTERSDS AQSAAEIPVA NQVNLPTKVR SRRKMDLKKP QRQKDLKIPD KSLDDTSASF  600
TALHDRAFSL KEKISNCLSN HQVRRWCTYE WFYSAIDYPW FAKRDFVEYL NHVGLGHVPR  660
LTRVEWGVIR SSLGKPRRFS EQFLNEEKEK LNQYRESVRT HYTELREGTR EGLPTDLARP  720
LSVGQRVIAI HPKTREIHDG SVLTVDRSRC RVQFDRPELG VEFVMDIDCM PLNPFENMPT  780
LLTRRADAVD KFFESFNELK VNARANEYMK FPACDNMENG NVFSHFSPPS HPISDLLKQT  840
KVASAEVDMQ SRSGVMETAT YQSMAYSKSS GVAQIQAKEA DVQALAELAR ALDKKEAVVS  900
ELRRMNDDVL ENQKSNDCSL KDSEPFKKQY AAMLIQLNEV NEEVSCALYR LRQRNTYQGS  960
IPLAFPRPVP NFADPSTLST FDRCTSQPQE SGFLVNEIIE SSKIKARTMV DAAVQAMLSL  1020
TDRDNTTEKI EEAIGFVNDR IPLDDSCMPT QPTDPKSKNM SDKNEAEIPS ELITKCVATL  1080
LMIQKCSERQ FPPADVAKVL DSAVASLQPC CSQNFPIYAE IQQCMGIIRN QILALVPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	35	KNLRKRK
2	31	36	LRKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-115	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595580.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009595581.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018624867.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3X518	0.0	A0A1S3X518_TOBAC; protein ALWAYS EARLY 3-like isoform X1
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]