PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009593289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 415aa MW: 44404 Da PI: 6.5969 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 6.9e-23 | 272 | 334 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN++Lk+e+++l ++++klk e+ XP_009593289.1 272 ERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTGENMTLKSEINKLMENSEKLKLEN 334 89**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.6E-36 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 9.9E-24 | 133 | 253 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.9E-16 | 266 | 331 | No hit | No description |
SMART | SM00338 | 1.1E-20 | 272 | 336 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-21 | 272 | 334 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.622 | 274 | 337 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.06E-10 | 276 | 326 | No hit | No description |
CDD | cd14702 | 9.49E-20 | 277 | 325 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 279 | 294 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGNSEDGKPS KPEKSSSPTP DQSNLHVYPD WAAMQAYYGP RVAVPTYFNS AVAPGHTPHP 60 YMWGPQPMIP PYGAPYAAIY AHGGVYAHPG VPIGSHPPGH GMATSPAVSQ AMDGASLSLD 120 ASAKSSENSD RGLLAMSLGN GSADNIEGGT DHGNSQSGDT EGSTDGSDTN GAGVSERSKK 180 RSRGTTPDNS GDSKSHLRRC QPTGEVNNDS EKTIVVVRPG KVEEKVMGTV LSPSMTTTLE 240 MRNPASTHLK ASPTNVSQLS PALPNEAWLQ NERELKREKR KQSNRESARR SRLRKQAEAE 300 ELAIRVQSLT GENMTLKSEI NKLMENSEKL KLENAALMEK LNNEQLSQTE EVSLGKIDDK 360 RVQPVGTANL LARVNNSGSL NRANEESEVY ENNSSGAKLH QLLDSSPRTD AVAAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 294 | RRSRLRK |
2 | 288 | 295 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z48602 | 0.0 | Z48602.1 N.tabacum mRNA for TAF-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593289.1 | 0.0 | PREDICTED: transcriptional activator TAF-1 | ||||
Refseq | XP_018624243.1 | 0.0 | PREDICTED: transcriptional activator TAF-1 | ||||
Swissprot | Q99142 | 0.0 | TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment) | ||||
TrEMBL | Q40586 | 0.0 | Q40586_TOBAC; TAF-2 | ||||
STRING | XP_009593289.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3113 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-84 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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