PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588121.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 461aa    MW: 50850.6 Da    PI: 4.8615
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.5e-34250304155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  XP_009588121.1 250 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 304
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.956247307IPR017930Myb domain
SuperFamilySSF466895.2E-18248304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-31249306IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25250304IPR006447Myb domain, plants
PfamPF002492.7E-10252303IPR001005SANT/Myb domain
PfamPF143791.8E-25335382IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEARPVVSVQ SVVASQLSNC GASGVLSSSF PMLPTVLGEK YPLLPDSQQT STEKELKQHP  60
GTFVSHLPSN SGAVGLMFSS SSGFSADLHF SSVQHQENHS GHAPFISQST NSETSILLPH  120
CGVLQSTASS QYLNENNEPW CIDPLPDFLD YSMNTPVQNS QLACSNKQSD WQEWADLVIN  180
EEDALTSNWN EIMADTSLAE KEVKMQYQEE KQPSNFPMQQ VQTSQQIPAV AVENSAIAPA  240
SSPASGAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKLMKVEGL TIYHVKSHLQ  300
KYRTARYKPE ASEESSEKKH SSIDDLSSLD LKTGIEITEA LRLQMEVQKR LHEQLEIQRN  360
LQLRIEEQGR YLQEMFEKQC KSIPGVDLAK GSSSTADDAF AQLSDAVQSS SCKNDPGVSQ  420
VDIPKEVDEK QKKREKEVGD PETNIISTSD SPPSKRSKLD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588121.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_009588123.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
SwissprotQ8GUN54e-94PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A1J6IT580.0A0A1J6IT58_NICAT; Protein phosphate starvation response 1
STRINGXP_009588121.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-80phosphate starvation response 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]