PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587785.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 417aa    MW: 46745.7 Da    PI: 5.024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001236258123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009587785.1 236 YECKTCNRTFPSFQALGGHRASH 258
                     99**********99999998887 PP
2zf-C2H213.60.0002318340123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009587785.1 318 HECSYCGAEFTSGQALGGHMRRH 340
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.1E-13235260IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-8235258No hitNo description
PROSITE profilePS5015710.658236263IPR007087Zinc finger, C2H2
SMARTSM003550.052236258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-8313340No hitNo description
PfamPF139122.6E-12318342IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806318340IPR007087Zinc finger, C2H2
SMARTSM003550.0098318340IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320340IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDALEEVDVG CPNKDLFHIV KGKRTKRLRL SGVPYNNNNI NNIEDGSDNE EGIACKNNNN  60
NIEDDSGNEE GHVVACKNNY NNNIEDRRDN GEDIAYKNNN NNIEDGSGNG EGIVACKNNN  120
NDIEDGSGNG EVVAYNNNTT NNNNDNNYSN RSSTNSAEIF INTFTDEEEE TAESLILMSK  180
LSDDHPRPPR FTLPPDNKVD FFNDNLRLYQ TKFNSKRYIE TSTNSANGTK AGIYVYECKT  240
CNRTFPSFQA LGGHRASHKK PKTILTTELS NKKSYFDFSD EDDYQELSPS TTTLYKNNKN  300
VTKTLPNSSN KFSSPRIHEC SYCGAEFTSG QALGGHMRRH RRGGNVNSPL HLSNLSPATS  360
IDQEFGNNIM KKPRDGLSLD LNIPVSDDHI DPKFPVVSLN QQDQEQTQRQ QLVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004520.0AB000452.1 Petunia x hybrida mRNA for PEThy;ZPT2-6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587785.10.0PREDICTED: putative uncharacterized protein DDB_G0287457
TrEMBLA0A1S3XWV50.0A0A1S3XWV5_TOBAC; GATA zinc finger domain-containing protein 15-like
STRINGXP_009587785.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-32C2H2 family protein