PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009586738.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20087.1 Da PI: 9.461

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.4	6.8e-12	15	57	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ ++k+ +v fs+ ++ + K A LS+LC++++a+iifs t XP_009586738.1 15 KFLKDKRAEKVAFSNKQKALSKRAIDLSTLCGIDIAIIIFSIT 57 57789999********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-4	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.507	7	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-7	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.09E-15	9	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-10	18	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-7	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-7	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MARMTSQMKN KSEKKFLKDK RAEKVAFSNK QKALSKRAID LSTLCGIDIA IIIFSITAEP 60 FLFGNPNVES VVERFSQAKQ PFYNMSSCKT THEKSEGCGK KDKMKKKEKK ATNEEEKGKS 120 TLEIFNPTNL ERLEKLMQEI DELEKDLTQK IDELQSEIGA KESKSVLEMN VTNPSAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586738.1	1e-125	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3XJ38	1e-91	A0A1S3XJ38_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009586738.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-08	AGAMOUS-like 61