 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009150295.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
NAC |
| Protein Properties |
Length: 274aa MW: 30988.9 Da PI: 9.5093 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009150295.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 125.5 | 4.3e-39 | 6 | 135 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t gyWkatg+ +v
XP_009150295.1 6 PVGFRFYPTEVELISFYLRFQLNGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATGSPGPV 100
89***************************999**************9656766667888************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
+s +++++g+kkt+vfy g+ap+g+kt+W m+ey+
XP_009150295.1 101 FSPDNRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135
**********************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MEHEIPVGFR FYPTEVELIS FYLRFQLNGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60
GDAEQWLFFV PRQEREARGG RPSRTTGLGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK 120
APTGRKTKWK MNEYKGIDET ASVSTIPKLR HEFSVCRIYI KSGSSRAFDR RPTEVYAIER 180
KLPRFGIETS SRATATRRTS EMVDGLSQLR ERKLPKNSVE TSSYDTFTTS QETSNSGGGD 240
QVQLPVNAST TQTISEMVDG LSQPFWEWEQ LNWS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-31 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-31 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-31 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-31 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 1e-31 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 1e-31 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 1e-31 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL138641 | 3e-86 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. |
| GenBank | CP002686 | 3e-86 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
