PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146001.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 451aa    MW: 50268.9 Da    PI: 7.1279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12304350455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  XP_009146001.1 304 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 350
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-4047216IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17300366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-14303354No hitNo description
PfamPF000104.0E-10304350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17304366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGQKFWDNQE DRAMVESTIG SEACDFFISS ASSLTKLLPP PPTDPNLQQG LRHVVEGSDW  60
DYAIFWLASN VNSSDGCVLI WGDGHCRVVK GNSGDEQDET KRRVLSKLHL SFVGSDLVKQ  120
GPLTDLDMFY LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG  180
FKTVLSVPVN CGVVELGSLK LIPEDKSVVE MVKSVFGGSD FVKTKEAPKI FGRQLSLGGS  240
KPRSMSINFS PKVEDDTGFS LEAYEVGGSN QVYGKDEAAL YLTDEQRPRK RGRKPANGRE  300
EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLA DAITYITDMQ KKIRVYETEK  360
QVMKRRESNQ ITPAEVDYQQ RQDDAVVRVS CPLENHPVSK VIQVFKENEV TPHDANVAVT  420
EEGVVHTFTL RPQGGCTAEQ LKDKLLTSLA Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26298381281Transcription factor MYC2
5gnj_B4e-26298381281Transcription factor MYC2
5gnj_E4e-26298381281Transcription factor MYC2
5gnj_F4e-26298381281Transcription factor MYC2
5gnj_G4e-26298381281Transcription factor MYC2
5gnj_I4e-26298381281Transcription factor MYC2
5gnj_M4e-26298381281Transcription factor MYC2
5gnj_N4e-26298381281Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146001.10.0PREDICTED: transcription factor bHLH3
RefseqXP_018510231.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLM4FBJ20.0M4FBJ2_BRARP; Uncharacterized protein
STRINGBra038458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]