PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145804.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 408aa    MW: 44386.3 Da    PI: 10.251
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-12329380556
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ ++ 
  XP_009145804.1 329 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEMQ 380
                     69***************************************87776666653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-10325391IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53327378IPR004827Basic-leucine zipper domain
PfamPF001702.9E-10329386IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-10329378No hitNo description
CDDcd147079.27E-24329381No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-12329379No hitNo description
PROSITE patternPS000360332347IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGTQINFNNL GGGGGGGDPG GEGFNQMKAT DTAYPLARQS SLYSRTFDEL QSLLGGPGKD  60
YGSMNMDELL KSIWTAEEAQ AMSMTMTSSA ATTMVQPGGN LQRQGSLTLP RTISQKTVDE  120
VWKCLITKDG GGSSGGGGGE SNNAPQRQQT LGEMTLEDFL FRAGVVREDN NSSQQMGQVT  180
GNNNNGFYGN NGAPGGLGFE FGQTNQNTIS FNNGTMQQQQ FQQQPQQQSR QQLNQSLPQQ  240
QRVPQTIFPK QANVAFTGPV GMVNKSFNGA VNNSLNNTNG LASFGGTGVT VAATSPGTSS  300
AENNSLSPVP YVLNRGRRSN TGLEKVIERR QRRMIKNRES AARSRARKQA YTLELEAEIE  360
KLKKVNQELQ RKQAEMMEMQ KNEQLKESSK KPWGSKRQCL RRTLTGPW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.273971e-136root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145804.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9719740.0JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145804.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_009145805.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_009145806.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_018514717.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
SwissprotQ9M7Q21e-178AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA0A3P5Z8C90.0A0A3P5Z8C9_BRACM; Uncharacterized protein
STRINGBo5g115300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.31e-160ABRE binding factor 4
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]