PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142667.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 379aa    MW: 40807.1 Da    PI: 9.885
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.89.9e-23261321161
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l++++ +l+ 
  XP_009142667.1 261 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSNNLRG 321
                     89*****************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.4E-31196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.1E-14130231No hitNo description
Gene3DG3DSA:1.20.5.1707.0E-19255321No hitNo description
SMARTSM003383.0E-21261325IPR004827Basic-leucine zipper domain
PfamPF001705.6E-21261323IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346263326IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11264320No hitNo description
CDDcd147022.30E-22266317No hitNo description
PROSITE patternPS000360268283IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGKSEEPKVT KSDNKPSSPP ADQTNVHVYP DWAAMQAYYG PRVAMPPYYN SAMAAASGHP  60
PPPYMWNPQH MMSPYGTPYA AVYPHGGGVY AHPGFPMGSQ PHGQKGATPL TTPGTPLNID  120
TPSKSTGNTE NGLMKKLKEF DGLAMSLGNG NNGDEGKRSR NSSETDGSSD GSDGNTTGAD  180
EPKLKRSREG TPAKDEKKHL VQSSSFRSVS QSSGDNNCVK PSVQGGGGAI VSAAGVSANS  240
NPTFMSQSLA MVPPETWLQN ERELKRERRK QSNRESARRS RLRKQAETEE LARKVEALTA  300
ENMALRSELN QLNEKSNNLR GANATLLDKL KSSEPEKRVK SSGNGDDKNK KQGDNETNST  360
SKLHQLLDTK PRADGVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283RRSRLRK
2277284RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.300610.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU271080.0U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142667.10.0PREDICTED: G-box-binding factor 3 isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLM4CK160.0M4CK16_BRARP; Uncharacterized protein
STRINGBra004550.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-178G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]