PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136740.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 594aa    MW: 65618.4 Da    PI: 6.7685
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28205258155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av++L G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  XP_009136740.1 205 KPRVVWSVELHQQFVAAVNHL-GVDKAVPKKILEMMNVQGLTRENVASHLQKYRI 258
                     79*******************.********************************7 PP
2Response_reg661.8e-22221321109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE..EEESTTTHHHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii..vvtahgeeedalealk 91 
                     vl+vdD+p+ +++l+++l+   y +v+ +  +e al ll++++  +D+++ D+ mp+m+G++ll++   e  +lp+i  +++a ++++ +l+ + 
  XP_009136740.1  22 VLVVDDDPTCLMILERMLKTCLY-RVTKCNRAEIALSLLRKNKngFDIVISDVHMPDMNGFKLLEHVGLEM-DLPVIskLMSADDSKSVVLKGVT 114
                     89*********************.***************999889**********************5544.67777558999999********* PP

                     TTESEEEESS--HHHHHH CS
    Response_reg  92 aGakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +e+l +
  XP_009136740.1 115 HGAVDYLIKPVRIEALKN 132
                     **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.3E-1684587IPR017053Response regulator B-type, plant
SuperFamilySSF521725.27E-3118147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.1E-3719160No hitNo description
SMARTSM004482.1E-2420134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.36421138IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-1922132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.50E-2423137No hitNo description
PROSITE profilePS5129412.263202261IPR017930Myb domain
SuperFamilySSF466891.16E-19203262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-29204263IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-25205258IPR006447Myb domain, plants
PfamPF002492.1E-8207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MLTPGAVGGS SNSDPFPSGL RVLVVDDDPT CLMILERMLK TCLYRVTKCN RAEIALSLLR  60
KNKNGFDIVI SDVHMPDMNG FKLLEHVGLE MDLPVISKLM SADDSKSVVL KGVTHGAVDY  120
LIKPVRIEAL KNIWQHVVRK KQNVSEHSGS VEETGGDRQQ QRDDDDDDGG DNNNSSSGNN  180
EGNLRKRKEE EQGGDDKEDT SSLKKPRVVW SVELHQQFVA AVNHLGVDKA VPKKILEMMN  240
VQGLTRENVA SHLQKYRIYL KRLGGVSQHQ GNINHSFMTG QDPSYGPLNG FDLQGLATAG  300
QLQAQSLAQL QAVGLGQSSS PLIKPGITSV DQRSFFTFQN SKSRFGDGHG PMMMNGGNKQ  360
TSLLHGVPTG HMRLQQQQMA GMRVAGPSMQ QQQQSMLSRR SVPETRSSRV LPGATHSAFN  420
NSFPLASAPG MMSVSDTKGV NEFCNPSYDI LNNFPQQQHH NNNNSVNEWD LRNVGMVFNS  480
HQDNTTSAAF STSEAYSSSS THKRKREAEL VVEHGQNQQQ PQSRSVNPMN QIYMNDGGSV  540
RMKTETVTCP PQATTMFHEQ YSNQDDLLSA LLKQEGLLDT EFDFEGYSFD NILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23201263163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896320.0AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
GenBankAC2324690.0AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136740.10.0PREDICTED: two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLM4D8D30.0M4D8D3_BRARP; Two-component response regulator
STRINGBra012743.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]