PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136216.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 209aa    MW: 23901.2 Da    PI: 6.2325
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.47.9e-5734129297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl+kyre+ege
  XP_009136216.1  34 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLNKYRETEGE 128
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_009136216.1 129 K 129
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.6E-5527154IPR009072Histone-fold
SuperFamilySSF471132.16E-4236155IPR009072Histone-fold
PfamPF008083.9E-2839103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.9E-196785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.9E-1986104No hitNo description
PRINTSPR006152.9E-19105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTEESPEEDH ESPGVAETNL GSPSSKNNNN NNNKEQDRFL PIANVGRIMK KVLPGNGKIS  60
KDAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDII WAITTLGFED YVAPLKVYLN  120
KYRETEGEKT NSPKQRQQQQ VQQNHHFQFQ EQDHNNISCT SYMSHHHPST FFPADHQPFP  180
NLPFSPKSLQ KQFPQQQHDN TDSIGQWSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4534124292Transcription factor HapC (Eurofung)
4g92_B2e-4534124292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876680.0KC787668.1 Brassica napus transcription factor subunit NF-YB7A (NF-YB7A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136216.11e-156PREDICTED: nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT91e-115NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A3P5ZP761e-155A0A3P5ZP76_BRACM; Uncharacterized protein
TrEMBLM4D9I31e-155M4D9I3_BRARP; Uncharacterized protein
STRINGBra013143.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-108nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]