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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009135446.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
NAC |
| Protein Properties |
Length: 350aa MW: 38600.5 Da PI: 8.9629 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009135446.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.7 | 1.1e-53 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelvv+yLk+kv++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
XP_009135446.1 17 LPPGFRFHPTDEELVVHYLKRKVASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLAS 110
79****************************.88***************999999***************************************99 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ +vg+kk Lvfy+g+ pkg+k+dW+mheyrl
XP_009135446.1 111 dGKLKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 144
55667***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MEITDSPGGS PPPQPNLPPG FRFHPTDEEL VVHYLKRKVA SAPLPVAIIA EVDLYKFDPW 60
ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGKLKVGVKK 120
ALVFYSGKPP KGVKSDWIMH EYRLIDNKPN NRPPGCDFGN KRNSLRLGDW VLCRSYKKNN 180
ASRHVYNDKD PDMFDYIFRK NPPSLSSGLH HNVSRSMNIF PGKFSGDYGI FSYGDPGLYD 240
GSGMVCSNGA GSVNINVSNG NPNGLNPASS SGPMMMMANL KRALWPVAEE EQDASPSKRF 300
HGVGGGDCLN MPSSVMEETP PLMQQGGVLG DDGLFRTTSY QLHGLNWYSS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-70 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-70 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-70 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-70 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-70 | 11 | 183 | 11 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 1e-70 | 11 | 183 | 11 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. |
| Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353226 | 0.0 | AK353226.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-D23. |
