PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130819.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 359aa MW: 39554 Da PI: 7.325

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009130819.1 150 YQCKTCDRTFPSFQALGGHRASH 172 9***********99999998887 PP
2	zf-C2H2	13.1	0.00028	224	246	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_009130819.1 224 HECGICGAEFTSGQALGGHMRRH 246 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.1E-12	149	174	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.07E-8	149	172	No hit	No description
PROSITE profile	PS50157	10.388	150	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.07E-8	219	246	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-4	222	248	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.3E-11	223	248	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	224	246	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.93	224	248	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	226	246	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSVSPPI VEEEVSNVLD SKENDVANRK 60 KDGVITSSSS SASWSSNNNP TLKAEEDEED QDIANCLILL SQGHSFPQHN QQLKIPHQEI 120 NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF 180 YSNLDVKKSI YENDAASLTN IYNNKNNNNR SLVAYGKAGN NKVHECGICG AEFTSGQALG 240 GHMRRHRGAV VVAAAPAPIV TVAAAAANTE LSLSSMSYDQ ISEGQDHLVM PEAKKAKKMV 300 VSLDLDLNLP APEDENRVNG LSLTLKQKHE QEQEHQQTKQ REEQVSLVLS APTLVDCYY

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSVSPPI VEEEVSNVLD SKENDVANRK  60
KDGVITSSSS SASWSSNNNP TLKAEEDEED QDIANCLILL SQGHSFPQHN QQLKIPHQEI  120
NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF  180
YSNLDVKKSI YENDAASLTN IYNNKNNNNR SLVAYGKAGN NKVHECGICG AEFTSGQALG  240
GHMRRHRGAV VVAAAPAPIV TVAAAAANTE LSLSSMSYDQ ISEGQDHLVM PEAKKAKKMV  300
VSLDLDLNLP APEDENRVNG LSLTLKQKHE QEQEHQQTKQ REEQVSLVLS APTLVDCYY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130819.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A397ZQT1	0.0	A0A397ZQT1_BRACM; Uncharacterized protein
TrEMBL	M4CNL5	0.0	M4CNL5_BRARP; Uncharacterized protein
STRING	Bra005803.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-138	C2H2 family protein