PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129869.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 945aa MW: 106020 Da PI: 9.313

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.5e-09	44	77	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT+ E e+++da +++G + Wk++a+ + ++R+ XP_009129869.1 44 QWTKVELERFYDAYRKHGRD-WKKVAAVVRNNRSV 77 6***************77.*****9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0023	41	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.25E-7	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-7	44	81	IPR001005	SANT/Myb domain
CDD	cd00167	6.33E-4	45	80	No hit	No description
Pfam	PF06584	2.9E-28	568	667	IPR033471	DIRP domain
SMART	SM01135	1.7E-45	568	668	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MGPSRTSKSV YKRSNKEASP EKELRNSSKT KPRKKRLTNK LGPQWTKVEL ERFYDAYRKH 60 GRDWKKVAAV VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE 120 EEEEEEEEEG HGASVKYQKR KLAQLSSSDF RQEVIPPHSV ASAGGCLPFL KLTQAYGIER 180 RAAGKRTPRF PVPSEYERED REVSMPPSKR AKKQLDADDD DTLALAMANA ARRGEGSQYR 240 RAEVNGSTSN GKVSQAKEAQ SKHGASSMVR NVVRIRRDRR HIKAAPGGAL LVNTEGVGTV 300 EVPPKGKNVR LEEAEGAASN DSGEAGSANE GFKSGDEFEA LQALAALSGL LSPDGLTESE 360 SNPQLKEDAI ASNVDEKPNT PETFVRSYHR RKSKQAGPED SLSHPVSPAN TRKQKSAQET 420 IDANAASIGE LGISKRKRKT LHDKESAKDD DLKTMFKARR ADQSPPKKLR TAKTAEESSS 480 PSDKKITEPD AVVSATQVSG PGPGPASLPQ RPPNRRKMSL KKSLRERAKI SETTHEKPHS 540 CKKELLKEQV STCLSCPLVR RRCIYEWFYS AIDYPWFAKM EFIDFLNHLG IGTPRLTRLE 600 WSVIKSSLGR TRRFSEKFIQ EERDKLKQYR ESARKHYTEL RTGAREVVPR DFAQPLSVGN 660 RVIAIHPKTR EVRDGKILTV DHNKCNVLFD DLGADMVMDI DIMPLNPLEY MPDGLMRQIE 720 SKEAELNRHP SSDKSALFPP VLENIDFSMV PPKKQDDRDK RVTTDQSYNI ANDNARQGEN 780 QRGLMLEYTS DAEEMEPEML EIVNLSRSIA QAMVDAAMKA ASLVKDDKDK RNVVLQALDS 840 IVSGLKHQGQ TNGSFEHHHH QSWSPSNTEG LMTSELIASC LSTWLMIQRC TEKQYPPADI 900 AQVMEIAVRS LEPRYPQNMP IYRDIQTCMG WITNQIMSLV KPMKI

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MGPSRTSKSV YKRSNKEASP EKELRNSSKT KPRKKRLTNK LGPQWTKVEL ERFYDAYRKH  60
GRDWKKVAAV VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE  120
EEEEEEEEEG HGASVKYQKR KLAQLSSSDF RQEVIPPHSV ASAGGCLPFL KLTQAYGIER  180
RAAGKRTPRF PVPSEYERED REVSMPPSKR AKKQLDADDD DTLALAMANA ARRGEGSQYR  240
RAEVNGSTSN GKVSQAKEAQ SKHGASSMVR NVVRIRRDRR HIKAAPGGAL LVNTEGVGTV  300
EVPPKGKNVR LEEAEGAASN DSGEAGSANE GFKSGDEFEA LQALAALSGL LSPDGLTESE  360
SNPQLKEDAI ASNVDEKPNT PETFVRSYHR RKSKQAGPED SLSHPVSPAN TRKQKSAQET  420
IDANAASIGE LGISKRKRKT LHDKESAKDD DLKTMFKARR ADQSPPKKLR TAKTAEESSS  480
PSDKKITEPD AVVSATQVSG PGPGPASLPQ RPPNRRKMSL KKSLRERAKI SETTHEKPHS  540
CKKELLKEQV STCLSCPLVR RRCIYEWFYS AIDYPWFAKM EFIDFLNHLG IGTPRLTRLE  600
WSVIKSSLGR TRRFSEKFIQ EERDKLKQYR ESARKHYTEL RTGAREVVPR DFAQPLSVGN  660
RVIAIHPKTR EVRDGKILTV DHNKCNVLFD DLGADMVMDI DIMPLNPLEY MPDGLMRQIE  720
SKEAELNRHP SSDKSALFPP VLENIDFSMV PPKKQDDRDK RVTTDQSYNI ANDNARQGEN  780
QRGLMLEYTS DAEEMEPEML EIVNLSRSIA QAMVDAAMKA ASLVKDDKDK RNVVLQALDS  840
IVSGLKHQGQ TNGSFEHHHH QSWSPSNTEG LMTSELIASC LSTWLMIQRC TEKQYPPADI  900
AQVMEIAVRS LEPRYPQNMP IYRDIQTCMG WITNQIMSLV KPMKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	414	RRKSKQAGPEDSLSHPVSPANTRKQK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129869.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189579	1e-173	AC189579.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011I15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129869.1	0.0	PREDICTED: protein ALWAYS EARLY 1-like
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A398AFK5	0.0	A0A398AFK5_BRACM; Uncharacterized protein
STRING	Bra020584.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	9e-66	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]