PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009126915.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 530aa MW: 59234.9 Da PI: 8.7744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009126915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	355	400	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L+ A +++ sLq XP_009126915.1 355 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIARDHLTSLQ 400 8899******************97.....8***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-15	350	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.243	350	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.67E-12	352	400	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-14	354	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-10	355	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-13	356	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASNEPSTS 60 TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR 120 IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPQPPPSSS 180 SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TTNMIHQQQQ 240 EPLFRNRERE EEVMTQAILA VLSMSSSPSS PQRKGKATAF KRYYCVASGG GGSGRAPQPP 300 SVRRQSMMKR AISFYNRLNI NWRERFPATG GGSDGIGGSG GGGGGRGPTA TQLHHMISER 360 KRREKLNESF QALRSLLPPG TKKDKASVLT IARDHLTSLQ GDISKLLERN RELEAKLAGE 420 REMEIFLQAD ERFNVRIIHI PESTSRERVL DLRIAHRGDN IGADDLIIRL LEFLKHINNV 480 SLVSIDGKTR AREDGVTSVI LVSLRLKIEG ECDESAFQEA IRRVVADLAH

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASNEPSTS  60
TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR  120
IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPQPPPSSS  180
SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TTNMIHQQQQ  240
EPLFRNRERE EEVMTQAILA VLSMSSSPSS PQRKGKATAF KRYYCVASGG GGSGRAPQPP  300
SVRRQSMMKR AISFYNRLNI NWRERFPATG GGSDGIGGSG GGGGGRGPTA TQLHHMISER  360
KRREKLNESF QALRSLLPPG TKKDKASVLT IARDHLTSLQ GDISKLLERN RELEAKLAGE  420
REMEIFLQAD ERFNVRIIHI PESTSRERVL DLRIAHRGDN IGADDLIIRL LEFLKHINNV  480
SLVSIDGKTR AREDGVTSVI LVSLRLKIEG ECDESAFQEA IRRVVADLAH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	363	ERKRRE
2	359	364	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009126915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB024035	3e-35	AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBank	CP002688	3e-35	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126915.1	0.0	PREDICTED: putative transcription factor bHLH041
Swissprot	Q9LTS4	0.0	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A078G7U1	0.0	A0A078G7U1_BRANA; BnaA02g08430D protein
STRING	Bo2g032920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]