PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 187aa MW: 21231.9 Da PI: 6.3636

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.6	1.5e-18	6	55	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a++ ++g XP_009121987.1 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAALLMNG 55 89**999.******8.....334********************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.8E-32	5	64	IPR001471	AP2/ERF domain
CDD	cd00018	6.92E-23	6	65	No hit	No description
SMART	SM00380	5.2E-39	6	69	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-11	6	55	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-20	6	64	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.221	6	63	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT 60 NFPVVKSEQQ GSDNDHDPNS PLMSTKSLSE LLNAKLRKSC KDLTPSLTCL RLDTDSSHIG 120 VWQKRAGSKT SPNWVMRLEL GNVVNESAHE LGMKKQDVEK AEDVEEEANV DEDQLAMEMI 180 EELLNWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: The SHN2 gene shows a pattern of expression associated with anther and silique dehiscence. Expressed in the stomium region when tapetum degeneration is initiated in the anther. Up to anthesis and until stamens fell off the senescing flower, restricted to the anther dehiscence zone. Subsequently, when petals and sepals withered, found at the bottom of each valve. During silique development, strongly expressed along the valve margin-replum boundary. {ECO:0000269\|PubMed:15319479}.
Uniprot	TISSUE SPECIFICITY: In flowers. {ECO:0000269\|PubMed:15319479}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121987.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121987.1	1e-137	PREDICTED: ethylene-responsive transcription factor SHINE 2
Refseq	XP_013666110.1	1e-137	ethylene-responsive transcription factor SHINE 2
Swissprot	Q9LFN7	1e-103	SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2
TrEMBL	A0A3P6DLV7	1e-136	A0A3P6DLV7_BRACM; Uncharacterized protein
TrEMBL	M4CXN8	1e-136	M4CXN8_BRARP; Uncharacterized protein
STRING	Bra008985.1-P	1e-137	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	5e-95	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Liu Y, et al. Functional Characterization of Populus PsnSHN2 in Coordinated Regulation of Secondary Wall Components in Tobacco. Sci Rep, 2017. 7(1): p. 42 [PMID:28246387] Kumar V, et al. A part of the upstream promoter region of SHN2 gene directs trichome specific expression in Arabidopsis thaliana and heterologous plants. Plant Sci., 2017. 264: p. 138-148 [PMID:28969794]