PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 23610 Da PI: 8.3542 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.9 | 8.1e-40 | 19 | 133 | 3 | 115 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeel+++yLk+kvegk++++ +vi+ev+iyk+eP+dL +++k++++ewyfF++ +k++++++ nratk+gyWk+tg dk+++++ XP_009121977.1 19 PGFRFHPTDEELITYYLKRKVEGKPMRF-DVIREVNIYKHEPSDLAelSRLKTKDQEWYFFCPLEKRQNSSTVINRATKEGYWKKTGDDKKIKRE 112 8*************************99.9***************8444899999**************************************99 PP NAM 96 .kgelvglkktLvfykgrapk 115 ++el+g+ ktLv+++gr+pk XP_009121977.1 113 gDDELIGVVKTLVYHRGRSPK 133 77888*************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-41 | 16 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.971 | 17 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-22 | 19 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTDPVLPAPV TASGKPIGPG FRFHPTDEEL ITYYLKRKVE GKPMRFDVIR EVNIYKHEPS 60 DLAELSRLKT KDQEWYFFCP LEKRQNSSTV INRATKEGYW KKTGDDKKIK REGDDELIGV 120 VKTLVYHRGR SPKDSYVVCR VIRKEHFGPS TECIYAPFSE QDWDDGINEK IQQVLDQINL 180 CVVHLSSYVN VKCCVGKPHA GKEPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-26 | 17 | 133 | 15 | 127 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121977.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121977.1 | 1e-152 | PREDICTED: NAC domain-containing protein 78-like isoform X2 | ||||
Swissprot | Q9SQX9 | 2e-59 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A3P6DLU5 | 1e-122 | A0A3P6DLU5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CXN3 | 1e-122 | M4CXN3_BRARP; Uncharacterized protein | ||||
STRING | Bra008980.1-P | 1e-122 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 6e-62 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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