PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110147.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 338aa    MW: 38415 Da    PI: 4.5786
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.6e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  XP_009110147.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58
                    79******************************************998776 PP
2K-box18.58.5e-08121190978
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                     + +++ e+l+qe+ +L++++++ ++e+R++  + ++  s+++ +  e+qL + l+++ +++++l+ ++++
  XP_009110147.1 121 AIKSDVEELEQEVCRLQQQLQMAEEELRRYEPDPVGFTSMEDYEVCERQLLDTLTHVVQRREHLVNSHLS 190
                     5678899********************************************************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-29281IPR002100Transcription factor, MADS-box
CDDcd002652.64E-34275No hitNo description
PRINTSPR004041.0E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK  60
TRIEDVFTRF INLSNQEREN ALVFPDQDRR PDIQSKEYLL RILQQLKTEN DIALQLTNPA  120
AIKSDVEELE QEVCRLQQQL QMAEEELRRY EPDPVGFTSM EDYEVCERQL LDTLTHVVQR  180
REHLVNSHLS SYEASTMQQG IAGPFANGVL EGWLPENGHN QVNLFDASAH SNQLRELSSA  240
MYEPLLQGSS SSSNQNNMSE CHVTNHNGDM FSEWAQAYSS SALFPSMNQH GSVGPSIEEM  300
IPGQQSEIPA VTTMEAPQQA KLEMVDDYET RVPQLSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-16190191MEF2 CHIMERA
6bz1_B2e-16190191MEF2 CHIMERA
6bz1_C2e-16190191MEF2 CHIMERA
6bz1_D2e-16190191MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110147.10.0PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A397YDS80.0A0A397YDS8_BRACM; Uncharacterized protein
STRINGBra016386.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]