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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 445aa MW: 49807.1 Da PI: 4.6506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.4 | 5.9e-32 | 55 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d e++++ L+k + + +e+i++vd i++++P++Lp vk++ + ++fF+++ k+y+tg+rk+r+++ + XP_009103075.1 55 LPRGVKFDPSDPEIIWHLLAKTGSLGLtphpfI--DEFIPTVDqddgICYTHPKNLP-GVKHDGTMCHFFHRAIKAYSTGTRKRRKIQdddlgDV 146 799************888887743332354332..334666655567**********.67788899*******************8665666589 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y+g++ +kt+Wvmh+y+l XP_009103075.1 147 RWHKTGRTKTVVL-DGVQRGCKKIMVLYEGKS---VKTNWVMHQYHL 189 9************.99************7665...56********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-37 | 40 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.723 | 55 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-13 | 56 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MAGRAWLVDK NRIATKILSA SDPCPTVWNT NPTRHCPNCH HVIDNSHEVD DWPGLPRGVK 60 FDPSDPEIIW HLLAKTGSLG LTPHPFIDEF IPTVDQDDGI CYTHPKNLPG VKHDGTMCHF 120 FHRAIKAYST GTRKRRKIQD DDLGDVRWHK TGRTKTVVLD GVQRGCKKIM VLYEGKSVKT 180 NWVMHQYHLG TDEDEKDGQY VVSKIFYQQP QQQGVLKKGG DKAEEEVSED IFAAATTTPK 240 ADPVTPRLFT PEPSRQAVPL RSDSHFANDY VTAHEVSLAE TSEGMYMEDE VQRNVERPSS 300 EDEPAPETMI HDKEDENDQE NKEGEENHQA EEEENLLDSG GSQFILNSQQ LVEALALCDD 360 LLQVGSQDAN NGGGGGGLRN KQQPCFGDYA HLGGTDDFKR DLEDCQKLVL DPCNIDLDTP 420 PEFRLSQLEF GSQESFLAWG TGKTD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103075.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189476 | 0.0 | AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103075.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M4D7L0 | 0.0 | M4D7L0_BRARP; Uncharacterized protein | ||||
STRING | Bra012470.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |