PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009102667.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 386aa MW: 42328.4 Da PI: 9.5383

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009102667.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.9	2.6e-18	19	108	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r XP_009102667.1 19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRL 108 ************666666665445556666666666777669999*************************************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	8.8E-14	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA 120 AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE 180 TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP 240 PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES 300 VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI 360 NKLANSMFAL ASSTSRHNNQ HQGGPS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP  240
PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES  300
VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI  360
NKLANSMFAL ASSTSRHNNQ HQGGPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009102667.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102667.1	0.0	PREDICTED: uncharacterized protein LOC103828785 isoform X1
Refseq	XP_013653078.1	0.0	uncharacterized protein BNAA07G06920D isoform X1
TrEMBL	A0A3P6B8R9	0.0	A0A3P6B8R9_BRACM; Uncharacterized protein
TrEMBL	M4DEI5	0.0	M4DEI5_BRARP; Uncharacterized protein
STRING	Bra014906.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-135	Trihelix family protein