PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 218aa MW: 23996.8 Da PI: 8.6396

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.9	1.6e-15	118	168	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +g+++A Irdp + k +r +lg+f tae+Aa a+++a+ +++g XP_009101439.1 118 HYIGVRQRP-WGKFAAGIRDPAK--KGAREWLGTFETAEDAALAYDRAAFRMRG 168 799****.******954..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.20E-28	117	176	No hit	No description
SuperFamily	SSF54171	9.81E-22	118	178	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.5E-29	118	176	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.194	118	176	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-10	118	168	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-34	118	182	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.3E-12	119	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.3E-12	158	178	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MYGEGEITAA AESDYALLES IRRHLLGGDN ELRINESIPS SCFTQSWGDL PLKENDSEDM 60 LVYSVLNDAF ETPSPSSDLS CLSDFNYFPA VKTESLDTFA AVVEKPKAVA SPPGKGKHYI 120 GVRQRPWGKF AAGIRDPAKK GAREWLGTFE TAEDAALAYD RAAFRMRGSR ALLNFPLRVN 180 SGEPDPVRIK SKRSYKSSSS SSSANGKPKQ RRRTENVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-40	115	183	2	70	ATERF1
3gcc_A	3e-40	115	183	2	70	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.26639	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101439.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189261	0.0	AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101439.1	1e-160	PREDICTED: ethylene-responsive transcription factor 2
Swissprot	O80338	1e-98	EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBL	M4E848	1e-159	M4E848_BRARP; Uncharacterized protein
STRING	Bra024954.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47220.1	2e-80	ethylene responsive element binding factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]