PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008246394.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1120aa MW: 124998 Da PI: 9.973

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008246394.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.7e-08	45	81	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ XP_008246394.1 45 EWSKGELERFYDAYRKYGKD-WRKVASAVR-NRSIEMVE 81 7***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-9	41	89	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-4	42	90	IPR001005	SANT/Myb domain
CDD	cd00167	1.21E-4	45	80	No hit	No description
Pfam	PF00249	7.3E-7	45	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-4	45	80	IPR009057	Homeodomain-like
Pfam	PF06584	4.2E-33	646	746	IPR033471	DIRP domain
SMART	SM01135	1.8E-59	646	747	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence Send to blast
MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRKRKLSD KMGPEWSKGE LERFYDAYRK 60 YGKDWRKVAS AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE 120 RESNDALGFS RKPQKRKLGK DQLSASKDVF QSHSNASHEG CLSLLKRRRL DGGQPRAVGK 180 RTPRFPVAYA YTKGDWDTYV SPIKKGRRSE GDNDDEVAHV AALLTEASQR GGSPQISQTP 240 YRRPVHVKSS SVQSSERMHP PRGKARANLR DPSMDEDWLE GSIGSKGAET GDHARDSLEG 300 VGTVEINWKG KKFYGKKEKA KDIGNHQFDD GGEACSGTEE GLNVSSRGKD DIEVSNTKGE 360 RFSPQGQRKR SKKLYFGDES SCLDALQTLA DLSLMMPEST MESGSSVQLK EEGTNLDVED 420 KFSVPEATST SQSRNKNKIP SAKHRVPFAI SGVEGTNSKK SKLGREPAFD TTAVSELEQQ 480 LQSTTKTWKR KRKSSVSKIS NADAPIDSNI NEPLKIEAFG EEENKPVTKG KRTNQSSTPS 540 KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ APTSNHVNLP TKRISRRKMY IPRTLHPKEK 600 SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC CLSSHLVRRW CTFEWFYSAL DYPWFAKREF 660 EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRFSEHFLHE EREKLKQYRE SVRKHYAELR 720 TGDREGLPTD LARPLSVGQR VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PDIGVEFVMD 780 VDCMPLNPLD NMPEALRRQN FAFDKFSLTS KEANKNGNLN FGGPHFEKAT SPMNTSVKQG 840 KGDSNHTTSQ PKVASADIDR AQAQQSTYSQ PGMVVAHNQA RDADIRALSE LTRALDKKVS 900 SALLNLRQRN TYPANSLPPW LKQPANSTVY GGLPSSFDSS ISQESGSSVA EIVEVSRSKA 960 HMMVNAAIQA MSSRKGGEDA YVRIREALDS IDSQHLPSDS RLSLNRSQEQ VNGNLGHRNQ 1020 LISSTSDPNF TSDSPGPKPN TDNEKTEAQV LSDVISACVM AVHMIQTCTE RQYPPAVVAQ 1080 VLDYAVTSLH PRCPQNVGIY REIQMCMGRI KTQILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence Send to blast

MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRKRKLSD KMGPEWSKGE LERFYDAYRK  60
YGKDWRKVAS AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE  120
RESNDALGFS RKPQKRKLGK DQLSASKDVF QSHSNASHEG CLSLLKRRRL DGGQPRAVGK  180
RTPRFPVAYA YTKGDWDTYV SPIKKGRRSE GDNDDEVAHV AALLTEASQR GGSPQISQTP  240
YRRPVHVKSS SVQSSERMHP PRGKARANLR DPSMDEDWLE GSIGSKGAET GDHARDSLEG  300
VGTVEINWKG KKFYGKKEKA KDIGNHQFDD GGEACSGTEE GLNVSSRGKD DIEVSNTKGE  360
RFSPQGQRKR SKKLYFGDES SCLDALQTLA DLSLMMPEST MESGSSVQLK EEGTNLDVED  420
KFSVPEATST SQSRNKNKIP SAKHRVPFAI SGVEGTNSKK SKLGREPAFD TTAVSELEQQ  480
LQSTTKTWKR KRKSSVSKIS NADAPIDSNI NEPLKIEAFG EEENKPVTKG KRTNQSSTPS  540
KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ APTSNHVNLP TKRISRRKMY IPRTLHPKEK  600
SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC CLSSHLVRRW CTFEWFYSAL DYPWFAKREF  660
EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRFSEHFLHE EREKLKQYRE SVRKHYAELR  720
TGDREGLPTD LARPLSVGQR VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PDIGVEFVMD  780
VDCMPLNPLD NMPEALRRQN FAFDKFSLTS KEANKNGNLN FGGPHFEKAT SPMNTSVKQG  840
KGDSNHTTSQ PKVASADIDR AQAQQSTYSQ PGMVVAHNQA RDADIRALSE LTRALDKKVS  900
SALLNLRQRN TYPANSLPPW LKQPANSTVY GGLPSSFDSS ISQESGSSVA EIVEVSRSKA  960
HMMVNAAIQA MSSRKGGEDA YVRIREALDS IDSQHLPSDS RLSLNRSQEQ VNGNLGHRNQ  1020
LISSTSDPNF TSDSPGPKPN TDNEKTEAQV LSDVISACVM AVHMIQTCTE RQYPPAVVAQ  1080
VLDYAVTSLH PRCPQNVGIY REIQMCMGRI KTQILALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	137	RKPQKRKL
2	165	169	KRRRL
3	585	606	RRKMYIPRTLHPKEKSSEKKLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008246394.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008246394.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X5
TrEMBL	A0A251NYS5	0.0	A0A251NYS5_PRUPE; Uncharacterized protein
STRING	XP_008246389.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding