PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243616.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 691aa    MW: 76897.2 Da    PI: 10.2372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243616.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.2e-101162345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwq 45
                     +W t E++llv+av+++G+++W+++a +++         + +t+ +c++++ 
   XP_008243616.1 11 PWGTLEELLLVCAVNRHGTKSWDSVAMEVQtkssstfasTLLTAQDCRDKFD 62
                     7************************************99999*****99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-6867IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-5995IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-4968IPR009057Homeodomain-like
CDDcd001671.06E-51165No hitNo description
PfamPF002493.9E-91163IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.106.8E-15307430IPR001487Bromodomain
SMARTSM002973.7E-15322431IPR001487Bromodomain
SuperFamilySSF473704.45E-17328432IPR001487Bromodomain
CDDcd043691.59E-13333426No hitNo description
PfamPF004393.5E-10335416IPR001487Bromodomain
PROSITE profilePS5001411.257341412IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAREHGTSGH PWGTLEELLL VCAVNRHGTK SWDSVAMEVQ TKSSSTFAST LLTAQDCRDK  60
FDDLKRRFVS KNDNQSHSLG QMVDELRNLR VDELRHEVHR RDVSIVSLEL KVKRLEEERE  120
RSLKEEAEAH PNNDLQSGGE DQLEASPENI AGETNSGEEF DSDERENRSF NESNSTSQRG  180
EAKENSVVAK QSEEEEPGPD GNEPDRVRTG TRTEPDRDCS VNGKVIDDEK EDNKKGGETV  240
GATQLGESNE FWESVSESKR EGKRGGVASK QNSDVQSSAS LSKRKRRRGG GGGEGGGRRS  300
RSRSSSGEEA EGDEVSPATS KGIKPKLVKH EPLIKVLRII RSHRLGSVFE RRLRSQESER  360
YKSLIRQHMD LHEVQSRLNK GVYTDCTHKF FRDLLLLFNN AVVFLRKTSP EHMAAQELRS  420
IVLKEMKDQL QIPQPTIDTV KLHAPKLESK VPKIEPDRSV KPSKPSVVVC GLRRSANGGG  480
GAKNRKGDKK ERGEVEEKGK ASEVEDKGIR KKRTQERGGR RGSRRDSSKN VGKTEHAYGG  540
NELSSHDGLE EMKMEKIENA KMTKQGAART FLKRMKQNST SIEVKRGSSD VSEGGESEDS  600
MVEEDEKKQK GKTKPDERKK RVTRSSTGRR GGRGGGRRDE ESSGRAKRGV GRPPKRPETA  660
EAGNGSGKRG RGNGEADQMG SAGRPRKRTR R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287KRKRRR
2283287RKRRR
3287297RGGGGGEGGGR
4607619KQKGKTKPDERKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243616.10.0PREDICTED: uncharacterized protein LOC103341840
TrEMBLA0A251NIS30.0A0A251NIS3_PRUPE; Uncharacterized protein
STRINGXP_008243616.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.16e-40DNA-binding bromodomain-containing protein