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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008237336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18867.8 Da PI: 9.802 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.8e-22 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie +s r+vtfskRr g++KKA+EL+++C++eva+iifs gk + + XP_008237336.1 10 LIETESARHVTFSKRRSGLFKKASELCTMCAVEVAIIIFSIGGKAFSF 57 5999************************************99987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.535 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-25 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.27E-25 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 2.0E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MGRKKTRMEL IETESARHVT FSKRRSGLFK KASELCTMCA VEVAIIIFSI GGKAFSFGHP 60 NVHSVFNRLR FSENPDASTS SNDVAGQDPI LHDLNKTHSD LIEDVGLVKK LGKKMRRAIM 120 EKPKPDWFYA PRESLSMEVL YEMKKALEDV QENVRRDKER LLEQA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008237336.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008237336.1 | 1e-120 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A314YUF0 | 1e-113 | A0A314YUF0_PRUYE; Agamous-like MADS-box protein AGL61 | ||||
STRING | XP_008237336.1 | 1e-120 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20409 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-34 | AGAMOUS-like 61 |