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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008235129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35454.4 Da PI: 5.1353 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 78 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a+++ ++ ++g XP_008235129.1 78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDREARIIRG 126 9*******.**********954...4*******************99988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 77 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-37 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 77 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-12 | 78 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.31E-32 | 78 | 135 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MCGGAILADL IPRNRGLRVT ASDIWPNSPF AKLDPDNFFD SNPSPLTRTG SSPRKRAQPT 60 SGNRQEEKPP KRARKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTP EEAARAYDRE 120 ARIIRGKKAK VNFPNEDDDI PTQTYLRNPY PPPLFQTNSE NLSNSHMPKS FDLGFGYDLN 180 QIATISSNSN SKGLSSMNLV NRDPTVISGE ENSGSGSDGA YSSTAGLLGC NQNGSSCYGE 240 AEVKEAEETK EGILNKDAIA MMEENEVQKL SEELMAYENM MKFYQIPYLD GQSTATQQPP 300 AQEGMVGNLW SFDDEGVSAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 73 | 136 | 10 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008235129.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ825097 | 0.0 | HQ825097.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.b) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235129.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | M5VKI0 | 0.0 | M5VKI0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235129.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-31 | ethylene-responsive element binding protein |