PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233818.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 388aa    MW: 42506.3 Da    PI: 4.4509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233818.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1879129155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+k+++g
  XP_008233818.1  79 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTALDAALAYDEAAKAMYG 129
                     56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1379129IPR001471AP2/ERF domain
CDDcd000181.99E-3079139No hitNo description
SuperFamilySSF541717.19E-2080137IPR016177DNA-binding domain
PROSITE profilePS5103221.41780137IPR001471AP2/ERF domain
SMARTSM003801.5E-3580143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3080138IPR001471AP2/ERF domain
PRINTSPR003672.7E-98192IPR001471AP2/ERF domain
PRINTSPR003672.7E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGAYDQVSNE VALTLDSTRK RKTRSRRDGT SVAETLEKWK EYNKQLESDN NVGKTRKVPA  60
KGSKKGCMKG KGGPDNSRCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTALDAALAY  120
DEAAKAMYGP AARLNLPNVA SYSSWKESSQ ETSSATTPSG SSAVASPGCS GSTTSSNHSE  180
VCADEDSKVF LDVKTENGEG ESAIHAWSNA LNQTLVKEET RDEFTQGYFH NDQPAVKPEA  240
YVGDFNWAGG PYTGDYLENF AEEEVFDVDE LLNPLDNTPV RNPEPEQGLG SDVGQPGCSG  300
MHPYECDRPS NLSYQLQFPD AKLLGSLNHM EQGPSGGEYN FDFLKRDDVT GEDDQGYYNL  360
GLSDLGLGDF TGGTMQPEDG SYNFSMDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1780137260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722TRKRKT
22027RKTRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695400.0KT369540.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233818.10.0PREDICTED: dehydration-responsive element-binding protein 2C
TrEMBLA0A0M4L9990.0A0A0M4L999_9ROSA; AP2/EREBP family transcription factor-like protein 8
STRINGXP_008233818.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-43ERF family protein