PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231316.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 742aa    MW: 81951.9 Da    PI: 10.3696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231316.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.7e-124093248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      +W t+E++ll++avk++G ++W+++a +++       +  t+++ck+++++++
   XP_008231316.1 40 SSWGTWEELLLACAVKRHGINDWDSVAMELQaktslphLLTTAYNCKLKYHDLR 93
                     57************************************899*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.0E-43895IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-53895IPR009057Homeodomain-like
PfamPF002496.0E-94092IPR001005SANT/Myb domain
CDDcd001673.30E-54192No hitNo description
SMARTSM002974.0E-12150432IPR001487Bromodomain
SuperFamilySSF473702.09E-17329429IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.4E-14331429IPR001487Bromodomain
CDDcd043693.01E-13337427No hitNo description
PfamPF004393.2E-11339411IPR001487Bromodomain
PROSITE profilePS5001411.726342413IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MMEGATGGTA THDATTTHTN NNNSNNSEPE LQDQTTTFTS SWGTWEELLL ACAVKRHGIN  60
DWDSVAMELQ AKTSLPHLLT TAYNCKLKYH DLRRRFNSRY SSQHQNDDVA LPSPPPPDHH  120
HHHHDPPSIP WLDDLRKLRV AQLRQELHRN DVSIVSLQLK VKRLEEERED SSKDDEAKPD  180
LEEEDSKGHR SENDKNIQDE PDRSKPDQEN QSVNGSNSTC SKSLDNKPGR EDRVASEPER  240
HPVPDGSREP TKGTGGGGHS ESESDKGSSE TVAKKRSREG KGGGDSAGEM RESSEAQSSA  300
SLTRKWNRKR RRRVEVPEQQ RNNEELLLVK SQPLVGVLQM IRAHEHSSLF ERRLPTQESD  360
KYKSMVQQHV DLETIQSKLH KDAYSSCALS FYRDLLLLFN NAVVFFPKSS LESLTAHQLR  420
RLVLNEMKKN NLITRPPPNP SPSSEPSDSL PAAAVHAPPP TTTPPCPPPP TQPPKRPDQL  480
ERSDSLLAKH KSTAPIIVCR KRSSISSKPS AAASIFDVKP KGEQQQPKQQ QQGDEKKKAA  540
AFDVKTPINN NKASSKDDVA EEHKGGGAGA KAKDNPVTTG TRSSRRTHHE NNKKDGSGST  600
KKQMETPKTD KKSKTEAAAL DKKRSAAADF LKRIKRNAPA ADTLKSGSGS GSGTSTRSGG  660
GEQKRRGGGK VDKVKERVLR QSGGDKKKQA KEESSSPSKR SVGRPPKKAA AETANVVASS  720
KRPRENGGKQ EASRRPRKRS RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307311RKRRR
2308313KRRRRV
3733741RRPRKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231316.10.0PREDICTED: serine/arginine repetitive matrix protein 1
TrEMBLA0A251Q8T00.0A0A251Q8T0_PRUPE; Uncharacterized protein
STRINGXP_008231316.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-76DNA-binding bromodomain-containing protein