PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226602.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 294aa    MW: 33265.3 Da    PI: 9.4847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226602.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.9e-1715102197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkvl     + ++ l+lp  f+e+ +g++  + +  l+ ++g+ W+v+l  + + +++++ +GW++Fv+++ L+ g f+vF +dg+s+f   v+
  XP_008226602.1  15 FFKVL--LGDFYQH-LRLPPVFIEKLDGQS-LP-KCALRGPNGKLWTVEL--EERENGFFFHDGWQGFVRDHCLEIGNFLVFDYDGDSKF--DVT 100
                     66666..6666666.9**********8873.44.89**************..**********************************9999..666 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_008226602.1 101 IY 102
                     65 PP
2B347.23.9e-151962721796
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++pk+ a + g++  ++k ++l+d+ grsW vkl++ +++   + +tkGW + ++an++ +gD++vF++++ s   + +++
  XP_008226602.1 196 TVPKELAIAEGLV--RQKSVKLQDPAGRSWIVKLRVHRSPYLrFDMTKGWAKCCRANQISQGDTIVFEFVKPSV--MQIHI 272
                     7899999999999..5567***************66444433599***********************876433..35555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-229107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.02812105IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-2213111IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-1914102No hitNo description
SMARTSM010191.4E-1415105IPR003340B3 DNA binding domain
PfamPF023621.1E-1415100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17177274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17177274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-13183274No hitNo description
SMARTSM010196.8E-10184276IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167195276IPR003340B3 DNA binding domain
PfamPF023621.1E-12196274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARKLSKPSL KKQSFFKVLL GDFYQHLRLP PVFIEKLDGQ SLPKCALRGP NGKLWTVELE  60
ERENGFFFHD GWQGFVRDHC LEIGNFLVFD YDGDSKFDVT IYEPTGCEKD VEAAKRRNGN  120
PVSSVKDEIV DIETENYNKE SKSKTINAER TSRKYVMSGK RPANDCVEET STGSILFKSE  180
NSCFIKILTK ILYPVTVPKE LAIAEGLVRQ KSVKLQDPAG RSWIVKLRVH RSPYLRFDMT  240
KGWAKCCRAN QISQGDTIVF EFVKPSVMQI HIYRGGRVGG SGCSVVLVNP GLKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226602.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A251PM900.0A0A251PM90_PRUPE; Uncharacterized protein
STRINGXP_008226602.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-28B3 family protein