PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008223287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARR-B | ||||||||
Protein Properties | Length: 675aa MW: 73837.8 Da PI: 6.2097 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.4e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_008223287.1 213 KPRVVWSVELHQQFVGAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 75.3 | 2.4e-25 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ y ev+ + +e al+ll+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a + ++ + + + G XP_008223287.1 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAEIALNLLRENKngYDIVISDVHMPDMDGFKLLERVGLEM-DLPVIMMSADDGKSVVMKGVTHG 127 89*********************.***************999999**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_008223287.1 128 ACDYLIKPVRIEALKN 143 ************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.6E-184 | 9 | 667 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 6.0E-42 | 32 | 173 | No hit | No description |
SuperFamily | SSF52172 | 1.14E-34 | 32 | 157 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.2E-30 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.541 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-22 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.29E-27 | 36 | 148 | No hit | No description |
PROSITE profile | PS51294 | 9.894 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-7 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MNLSNGMGSM STASSSGAWK SADVVSDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60 KCNRAEIALN LLRENKNGYD IVISDVHMPD MDGFKLLERV GLEMDLPVIM MSADDGKSVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KKKNEWKEVE QSGSVEEGDR QPKPSEDADY 180 SSSANEGTWK NSKRRKDEEE EADERDDSST LKKPRVVWSV ELHQQFVGAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHPSN LNNSFLSPQE ASFGAMSSLN 300 GLDLQTLAVT GQLPAQSLAT LQAGLGRSTA KSGMPMPLVD QRNLFSFENP KLRFAEGQQH 360 LSSSKPMNLL HGIPTNMEAK QLANLHQSAQ SLGGVNMQVN AHGVQNSALL MQMSQPQSRG 420 QILNETSGNH VPRLSSSMGQ PILSNGIPSG VLGRNGIADN GRGAGYNPVQ QNSSMLNFPL 480 NNSSELPGNN FTLGSTPGMS SLTSKGAFPE DVNCEIKRSS GFAPSYDIFN ELHQHKSNDW 540 DLQNVGLTFD ASQHTNTMHG SLDSSVLVHQ GFSSSQRSVQ SRNPSTVGKA MFSIGEGTHH 600 VNVQNNGQHL NSLIVDNTVR VKAERVPDAS SQTSYFNEQF GQEDLMSALL KQQEGIGATE 660 NEFDFDGYSL DNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-21 | 212 | 272 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008223287.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008223287.1 | 0.0 | PREDICTED: two-component response regulator ARR2 isoform X2 | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | M5XK84 | 0.0 | M5XK84_PRUPE; Two-component response regulator | ||||
STRING | EMJ26354 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 0.0 | response regulator 1 |