PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220912.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 667aa    MW: 72052.1 Da    PI: 6.2684
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220912.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.7e-27232285155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  XP_008220912.1 232 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQKFRL 285
                     79*******************.********************************8 PP
2Response_reg752.9e-25481561109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+++l +  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + ++ G
  XP_008220912.1  48 VLVVDDDTTCLRILEVLLGRCAY-QVTACSQATVALNLLRERKgcFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTSAVMQGIRHG 140
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp++++el +
  XP_008220912.1 141 ACDYLIKPIHEAELKN 156
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.0E-4045179No hitNo description
SuperFamilySSF521725.12E-3445166IPR011006CheY-like superfamily
SMARTSM004485.7E-2946158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.86547162IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2248156IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.21E-2649161No hitNo description
SuperFamilySSF466897.35E-19229289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28229289IPR009057Homeodomain-like
PROSITE profilePS512949.969229288IPR017930Myb domain
TIGRFAMsTIGR015571.9E-23232285IPR006447Myb domain, plants
PfamPF002494.4E-7234283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAALQRVAQS SVSTTASSYG SCKGGAASSF SAANEMAVSD RFPAGLRVLV VDDDTTCLRI  60
LEVLLGRCAY QVTACSQATV ALNLLRERKG CFDVVLSDVH MPDMDGFKLL EHVGLEMDLP  120
VIMMSADGRT SAVMQGIRHG ACDYLIKPIH EAELKNIWQH VVRKKWNGNK ELDHSGSLED  180
NDRNKRGNSD VEYTSSANEG TEVILKGPKK RSNAKEDDDG DMENDDPSTS KKPRVVWSVE  240
LHQQFVSAVN QLGLDKAVPK RILELMNVPG LSRENVASHL QKFRLYLKRL AQQQSGISNG  300
FCGPVESNGK LGSLSRFDIQ ALAASGQIPP QTLAVLQAEL LGQPAGNLVP AMDQPAILHA  360
SLQGPKRAPV EHGVPFMQPL IKCQSNVSKH FPQSIIPAED VSSGFGSWRS NSLSTVAPSN  420
NLGGLATHNS SMLMDIMQQE QRQHKKTQQQ SVLTESSRLI NVQPSCLVVP SQSSTSFQAG  480
NSPASVNQSC SFNRSTVIDY SILSAQSNNS SLNIGHIPTG NLKTPSILDG YSAPGSVPST  540
SCSVNADNNT SHQNSAVPFC DSRQLPGVLH DMSNIQGLYV DKSGEMLDQG PLRNLGFVGK  600
ETGIPSQFAV DDFESQASNL NHGKIYVENN GNPVKEEPSM NFVDNAKVGI PILQEFSCSD  660
FMSVFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21228291164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220912.10.0PREDICTED: two-component response regulator ORR21
SwissprotA2XE311e-160ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-161ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLM5XK720.0M5XK72_PRUPE; Uncharacterized protein
STRINGXP_008220912.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-115response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]