PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219758.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 374aa    MW: 42265 Da    PI: 7.6147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219758.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05214233120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_008219758.1 214 FSCPLCFKTFNRYNNMQMHM 233
                     89*****************9 PP
2zf-C2H214.40.00011298320123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_008219758.1 298 FMCRKCGKAFAVRGDWRTHEKNC 320
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66214241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-5214233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-6279318No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5294318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808298318IPR007087Zinc finger, C2H2
SMARTSM0035549298318IPR015880Zinc finger, C2H2-like
SMARTSM00355190324347IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTDPYSNYFN NGWFNLNPLH HISSPSTPSS INPYNFHAPP NYRDYNNFCS SNNLMVHNQS  60
FFINHHQSSS SSSSPPSPPL REALPLLSLS PSRHHHPHED LQEPSFNAME ADHQNNNNSR  120
KDSADHQSLV VSSSADIVDQ DEVDETVTVA LHLGLPSRTL SADLISRLSS PEISSDKEVV  180
DVTVASAGYA PNRLNKGQYW IPTPAQILIG PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY  240
RKGPESLRGT QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC  300
RKCGKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIKAFGHGHA AYGIDCFEED  360
DDAASEIEEN YSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219758.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-135ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A251NKS50.0A0A251NKS5_PRUPE; Uncharacterized protein
STRINGXP_008219758.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]