PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219575.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24406.8 Da    PI: 8.9993
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219575.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v+++if+s+gk+ ey+s
  XP_008219575.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLVIFASSGKMVEYCS 59
                    79***********************************************96 PP
2K-box80.73.4e-2771169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+ + gk+l++ak+e+l++e++++kk ++++q e+Rhl+Ged++sL++keL+ Le++Le++l +iR+kK++++    e+ +  e+e+++ + +L+
  XP_008219575.1  71 YHGQAGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLTHKELMALEDALENGLASIRDKKSKFVDILRENERALEEEHKRLTYELH 165
                     56678899******************************************************************************999999999 PP

           K-box  96 kkle 99 
                     k+ +
  XP_008219575.1 166 KQEM 169
                     9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-35296IPR002100Transcription factor, MADS-box
CDDcd002656.53E-37280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1882164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.00384170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLVIFAS SGKMVEYCSP  60
SVTVTDILDK YHGQAGKKLW DAKHENLSNE VDRVKKDNDS MQVELRHLKG EDITSLTHKE  120
LMALEDALEN GLASIRDKKS KFVDILRENE RALEEEHKRL TYELHKQEMK IEENVRELEN  180
GYHQRLGNYN NQIPFAFRVQ PIQPNLQERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16191183MEF2 CHIMERA
6bz1_B1e-16191183MEF2 CHIMERA
6bz1_C1e-16191183MEF2 CHIMERA
6bz1_D1e-16191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0056630.0EU005663.1 Prunus persica PISTILLATA-like protein (MADS10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219575.11e-155PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA251e-116MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA7LCX01e-149A7LCX0_PRUPE; PISTILLATA-like protein
STRINGXP_008219575.11e-154(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]