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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16651.8 Da PI: 9.8048 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.4 | 1e-14 | 35 | 84 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GVr++k +gr+ +eIrd + +kr +lg+f+t+e+Aa + + + ++e XP_004512872.1 35 SKYRGVRRRK-WGRYSCEIRDpF----LKKREWLGTFDTEEQAALVYKKKKDEFE 84 89*****998.**********44....25**********9999999988877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-8 | 35 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-19 | 35 | 98 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-16 | 35 | 90 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-15 | 36 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.61 | 36 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-20 | 36 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MPTVKRVTKE ILIPKLESSS KLYMKEGNRK TVSTSKYRGV RRRKWGRYSC EIRDPFLKKR 60 EWLGTFDTEE QAALVYKKKK DEFEKRKALL HLKNFKQDDF EIDLNCKAQG KGCGGGNNFD 120 DSSDDDDNVG GGSSHHNIMD VQGNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 79 | KKREWLGTFDTEEQAALVYKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512872.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027193434.1 | 4e-65 | ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A3Q7XI66 | 9e-64 | A0A3Q7XI66_CICAR; ethylene-responsive transcription factor CRF6-like | ||||
STRING | XP_004512872.1 | 1e-104 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 2e-18 | ERF family protein |