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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510277.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 37492 Da PI: 5.3373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +grW+AeIrdp + r +lg+f+tae+Aa a+++a+ ++g XP_004510277.2 96 CKYRGVRQRP-WGRWAAEIRDP-----KlqIRRWLGTFDTAEDAAMAYDRAAIFYKG 146 79********.**********9.....334889*******************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-12 | 96 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-29 | 96 | 152 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-19 | 97 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-27 | 97 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-30 | 97 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.062 | 97 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MPKVVRITLN DDYATDSSSD EEKYKGNGRR KVKKMVSEIK LIPCSTLSNI DHENNNGNDG 60 DHEGFGKKKK KNNNNNNKMR QRHKPMRHVI TSTNDCKYRG VRQRPWGRWA AEIRDPKLQI 120 RRWLGTFDTA EDAAMAYDRA AIFYKGCDAI TNIIKPPPKP TKLSLAEETS SSMPKLNLTE 180 DFSLLNVSTL NLAGGVSLSE PSLIEDVSLF EMRDVSTFND SSVVVDCDGY KKKEDCKGCS 240 FSSPISVIEF NNERINEQKW ISGVTEENYM DDDFMFVEPN GSSFYEPLLT MVSNESNCIV 300 DIPFHFEDDF ESCKREIDNY FENGPLSKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 98 | 152 | 3 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | GKKKKKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510277.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510277.3 | 0.0 | ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A1S2YUU7 | 0.0 | A0A1S2YUU7_CICAR; ethylene-responsive transcription factor CRF1-like | ||||
STRING | XP_004510277.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-22 | cytokinin response factor 4 |