PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509014.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 331aa MW: 37898.5 Da PI: 7.89

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3e-50	6	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+kveg ++el +vi+ ++ yk++Pw+Lp k + ++++ew+f+++rd+k+++g+r+nratk+gyWk tgk+++v+ XP_004509014.1 6 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-QVIPVINFYKFDPWELPeKsFLPKGDSEWFFYCPRDRKHPNGSRTNRATKAGYWKVTGKERKVV 99 79**************************.99**********95345566899*********************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +g +ktLvfy grap g +t+W+mheyrl XP_004509014.1 100 SQctSSTITGSRKTLVFYLGRAPLGDRTNWIMHEYRL 136 9877778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-58	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	56.38	6	159	IPR003441	NAC domain
Pfam	PF02365	2.0E-28	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGEALLPPGF RFHPTDEELV GYYLKRKVEG LEIELQVIPV INFYKFDPWE LPEKSFLPKG 60 DSEWFFYCPR DRKHPNGSRT NRATKAGYWK VTGKERKVVS QCTSSTITGS RKTLVFYLGR 120 APLGDRTNWI MHEYRLTDDL VQHSSFLKGG LALCRVIKKN EKSKRAATSL VNRNEISMRF 180 SSEPFCKSGD VSSQASHLNN ESGYSSPVTS PQNVAPIAEF NHVSKETNPS NFWISSDMIL 240 DSSKEFTQVK DVVSQYFPRC DSPRQSEHTT ISPSLSYSNF NSEIEFVYNP SQIGYMSPYS 300 NQVNLMDNYG NWNVPYEGYD KLNLVSYQEP F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-51	6	165	20	174	NAC domain-containing protein 19
3swm_B	4e-51	6	165	20	174	NAC domain-containing protein 19
3swm_C	4e-51	6	165	20	174	NAC domain-containing protein 19
3swm_D	4e-51	6	165	20	174	NAC domain-containing protein 19
3swp_A	4e-51	6	165	20	174	NAC domain-containing protein 19
3swp_B	4e-51	6	165	20	174	NAC domain-containing protein 19
3swp_C	4e-51	6	165	20	174	NAC domain-containing protein 19
3swp_D	4e-51	6	165	20	174	NAC domain-containing protein 19
4dul_A	4e-51	6	165	17	171	NAC domain-containing protein 19
4dul_B	4e-51	6	165	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509014.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174361	8e-84	AC174361.12 Medicago truncatula chromosome 8 clone mth2-39o9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509014.1	0.0	NAC domain-containing protein 71
Swissprot	O49697	1e-94	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A1S2YS17	0.0	A0A1S2YS17_CICAR; NAC domain-containing protein 71
STRING	XP_004509014.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	4e-97	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]