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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 503aa MW: 55086 Da PI: 5.6436 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 4e-30 | 262 | 320 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt++ Cpv+k+v+r+aed +v+++tYeg+Hnh XP_004506257.1 262 SDGCQWRKYGQKMAKGNPCPRAYYRCTMSsACPVRKQVQRCAEDRTVLITTYEGNHNHA 320 7***************************999***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-32 | 246 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-27 | 254 | 322 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.011 | 256 | 322 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-35 | 261 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-26 | 263 | 319 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MDSIVSTNGS SSSSHGTIPF QVNLSCSNET RTELDFFKDN NNDHHKVVSH NDLNNTPSFM 60 EFQVNTGLNL LTTNTSSDQS MVDDDMSPNS YDKKTKDECL ILQGDLDRVK MENRRLTLML 120 DQLKADYTAL QMHMANLMQE KKAEEQEVFD GKFEEKKKVE NSGVLMPRQF MDLGLAANAE 180 VDDPASPSXG RSRDQLGSPT NVEVASMEEG IIKNENVGVE EKKEIERHNF SPPKNVNVDQ 240 VEATMRKARV SVRARSDAPI ISDGCQWRKY GQKMAKGNPC PRAYYRCTMS SACPVRKQVQ 300 RCAEDRTVLI TTYEGNHNHA LPPAARGMVE TTSSAATMLL SGSTSSTDHG LMNPNFLTRT 360 FLPCSSTMAT ISASAPFPTI TLDLTQSPNP LQLQNFANSS APSLIPQIFG QVPNNFQQSK 420 FSGLQLSQNS IDSSHLASIP NLADFSAAIT KDPNFTAALA VAITSIFGGV QQNNNTNDNN 480 NNVTSCNNNG NVTSGNNNNN GKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-23 | 248 | 324 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506257.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506257.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-119 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1S2YKR3 | 0.0 | A0A1S2YKR3_CICAR; probable WRKY transcription factor 31 | ||||
STRING | XP_004506257.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-106 | WRKY family protein |