PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004498071.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

ERF

Protein Properties

Length: 203aa MW: 23070.9 Da PI: 8.7202

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.5	3.3e-18	112	162	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r++lg+f+ + +Aaka++ a+ k++g XP_004498071.1 112 RYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDCEIDAAKAYDSAAFKMRG 162 7******.******854..34******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.026	112	170	IPR001471	AP2/ERF domain
SMART	SM00380	9.6E-34	112	176	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-21	112	172	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.1E-31	112	171	IPR001471	AP2/ERF domain
Pfam	PF00847	4.8E-13	112	162	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-13	113	124	IPR001471	AP2/ERF domain
CDD	cd00018	6.93E-23	120	170	No hit	No description
PRINTS	PR00367	2.2E-13	152	172	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTTAKETSNL DLIRYHLLGD NISDPNNFLH PVKLEHPSPE FDFTSYISDN STTFFTFLES 60 YDLVADMEFF TNNTSPTNET KPSKERNSPE PITLVSKETK KEKCVVDATT RRYRGVRRRP 120 WGKFAAEIRD PSRKGSRVWL GTFDCEIDAA KAYDSAAFKM RGQKAILNFP LEAGVCHPKP 180 NCCGKKRRRE SEIEATRSST SSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-27	108	171	1	64	ATERF1
3gcc_A	1e-27	108	171	1	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498071.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF965422	1e-105	JF965422.1 Medicago sativa ethylene response factor 8 (ERF8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498071.1	1e-151	ethylene-responsive transcription factor ERF107-like
Swissprot	O80341	5e-35	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A1S2Y3R7	1e-149	A0A1S2Y3R7_CICAR; ethylene-responsive transcription factor ERF107-like
STRING	XP_004498071.1	1e-150	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5257	30	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	8e-31	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]