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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 38129.6 Da PI: 6.9278 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.2e-20 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a++k++g XP_004496448.1 126 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALKFRG 175 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-22 | 126 | 184 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.725 | 126 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-14 | 126 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 126 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-38 | 126 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 127 | 138 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.44E-15 | 134 | 185 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSYPLVSAPT HDGLGQAQNE WVQVQQGYVP VSTSSNYSPR LYSSTSITSS SSPSSSSSSW 60 VVGHKRGRED DFHNTRQVAA SSHHQDFTSI HTNVADFRLP SSQGPSSSEA RRRESNEEES 120 GERRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFETAE AAARAYDEAA LKFRGSRAKL 180 NFPENVTTTI SPTFPPNTSS TVSVNPATHY SPAPPLQMQQ PPFTQFQGSS DLLRDYYQYS 240 QILKGSADFQ GLEQWFYESQ MAAIHSSSSM LSPSPPLLSF SSSSSSLPTT AFSPATQLSS 300 ASLPLFPGQQ IEFFRPPEDH SHGEDVGGGS GLPPSTWSDT SGYPPPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 125 | 186 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 125 | RRRESNEEESGERRRR |
2 | 121 | 126 | ERRRRY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496448.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496448.1 | 0.0 | ethylene-responsive transcription factor ERF110-like isoform X2 | ||||
TrEMBL | A0A1S2XYF7 | 0.0 | A0A1S2XYF7_CICAR; ethylene-responsive transcription factor ERF110-like isoform X2 | ||||
STRING | XP_004496448.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-19 | related to AP2 6 |