PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493757.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 504aa    MW: 55738.9 Da    PI: 7.8902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12356402455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  XP_004493757.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 402
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-3752227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.456352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-14355406No hitNo description
SuperFamilySSF474593.27E-18355424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17356422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00971452503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MKKGERFFEN QEDKAMLESV LGTEAVTFFS SAVSKHVFSD VVVPPNMDLG IHKRLCHLVK  60
GSKWSYAILW QVAGLKSGGY VLKYGDGHCE DLKVDKRNEK DGEKDDFRRK VLGKLHACWG  120
GSDSIENVYK KLDNVSDLYM LYLTSVYYVF GFNSQYGPGN SFKCVKPSWA ADAGSCSNQY  180
ESRSFLAKSA GFQTVVFVPL KTGVVEFGSM ELMPEEQGFL DLVRTTFGES SSGQAKVVPK  240
IFGRELSLGD AKSPSITISF SPKVEDESGF TSDSYEVHTL GANHAYGNSS NGGVGDSTEA  300
KMFPQLGQMV PGNFTSQARV SSADLGNEES SSPLADERKP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITHITD LQKKIKLLET EKNMVNNKGQ  420
QLSFQDIDFQ ARQDDAIVRV SCPMDIHPVS GIVKIFREHQ IVAQEANVST AQDKVIHTFS  480
IRTQGGEAAA VQLKEKLEAS LSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-29350425277Transcription factor MYC2
5gnj_B8e-29350425277Transcription factor MYC2
5gnj_E8e-29350425277Transcription factor MYC2
5gnj_F8e-29350425277Transcription factor MYC2
5gnj_G8e-29350425277Transcription factor MYC2
5gnj_I8e-29350425277Transcription factor MYC2
5gnj_M8e-29350425277Transcription factor MYC2
5gnj_N8e-29350425277Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493757.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1336851e-169BT133685.1 Medicago truncatula clone JCVI-FLMt-16B12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493757.10.0transcription factor bHLH3 isoform X1
RefseqXP_027188841.10.0transcription factor bHLH3 isoform X1
SwissprotA0A3Q7H2161e-171MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A1S2XSA10.0A0A1S2XSA1_CICAR; transcription factor bHLH3 isoform X1
STRINGXP_004493757.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-161bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]