PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492798.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 328aa    MW: 36053.7 Da    PI: 6.6693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31158216259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY++eHnh+
  XP_004492798.1 158 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTSEHNHP 216
                     79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-31150218IPR003657WRKY domain
PROSITE profilePS5081134.486152218IPR003657WRKY domain
SuperFamilySSF1182903.14E-26155218IPR003657WRKY domain
SMARTSM007744.0E-37157217IPR003657WRKY domain
PfamPF031067.6E-26159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDQDWDLHAV VRGCSTVTST TSTTTSTTTS VSSSSAFPLH PQEPSCGFSS IFGSEQKAQI  60
LSHPFEPTSS SIEELHELCK PFFSTSQPLS LQTSPLFSSF SYSSAPPPKL AQTQDKQQQQ  120
QHRSKQPHHS GSVTTPRSKR RKNQLKKVCQ VPVENLSSDI WAWRKYGQKP IKGSPYPRGY  180
YRCSSSKGCL ARKQVERNRS DPTMFIVTYT SEHNHPAPTH KNSLAGSTRN KPSTPPQSDT  240
NKALTTKPSS PTTSEEVQTQ GEKSESKEDL MDEEEDDQFG LSDVVLSDDF YESLDELSQL  300
AAFGDCFTDP FSAIAIPTWT AATAAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-23144219480Disease resistance protein RRS1
5w3x_D7e-23144219480Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573772e-72AC157377.6 Medicago truncatula chromosome 7 BAC clone mth2-75b23, complete sequence.
GenBankAC1866772e-72AC186677.3 Medicago truncatula chromosome 7 BAC clone mth2-44m6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492798.10.0WRKY transcription factor 22
TrEMBLA0A1S2XQ800.0A0A1S2XQ80_CICAR; WRKY transcription factor 22
STRINGXP_004492798.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-66WRKY family protein