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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030406-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 39435.7 Da PI: 6.6031 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 181 | 230 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g WALNUT_00030406-RA 181 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 230 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.06E-34 | 180 | 240 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-23 | 181 | 239 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-38 | 181 | 244 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 181 | 238 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 181 | 239 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 182 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 182 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 204 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAATADLYSS GHLQSASYGG ELMEALEPFM KSASSSTIPC SSSATQYPSS PSSSPYVPST 60 SSTSSTSSAS DYDFNFLLSH SVPNQPGFYP DGCSTSTTPM FSDGISTQNL VGFEQPAPLG 120 LNQLTPSQIL QIQAQIHLQK QNSYPQHHSL PQQDGRGTLG LLGLKPIAMK HVGSPPKPTK 180 LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDRAAYKLRG DFARLNFPNL 240 RHQVDYQPLH SSVDAKLEAI CESLASSQKQ GKGEKRVRSS RKSRQAEAES VGEAESKSSE 300 SCRKVEISSS PLTTESDGSA GSSPLSDLTF ADSDEPQWDV ASENFLLQKY PSYEIDWASI 360 LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 180 | 238 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811399.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 5e-91 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2I4DW74 | 0.0 | A0A2I4DW74_JUGRE; ethylene-responsive transcription factor RAP2-13-like | ||||
STRING | cassava4.1_010102m | 1e-127 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-70 | related to AP2 4 |
Publications ? help Back to Top | |||
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