PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00030223-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Nin-like

Protein Properties

Length: 348aa MW: 38721.7 Da PI: 5.0079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00030223-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.8	5.8e-25	255	304	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l++l +yF+lpi++AA+ L++c+TvLK+iCR+ G++RWPhRk+ksl WALNUT_00030223-RA 255 GKLTLNELGRYFNLPIEEAARRLNLCPTVLKKICRRDGMNRWPHRKVKSL 304 579*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	244	325	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-22	256	304	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MADPSAIVPY IDPYDRPLTD NINFDFMNDS TPTLADLSSF ALPTSPDFAA VEHLLDVDPS 60 EDPAVGDMRD DSNNSGAGNK SQAAGPSASA NDGNARPLFA WPVAPIPFNC SCCHVLREII 120 YCNGTNTKKL EIHGRLGMIC HAVLEDLQNV NRNSSSNQYQ MFDFCKKSIE DVKQFLMKYC 180 LEQNIAGYVM VPDPLATYYE ALCVGLEWDD DDVLLDDLNF QPSPTNSGGA RPMNEPEATR 240 PTHKVSLAAQ RERAGKLTLN ELGRYFNLPI EEAARRLNLC PTVLKKICRR DGMNRWPHRK 300 VKSLQKQISS LRASLESNIN AEARANARAE IDRLEQELTN VCRGVTLR

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MADPSAIVPY IDPYDRPLTD NINFDFMNDS TPTLADLSSF ALPTSPDFAA VEHLLDVDPS  60
EDPAVGDMRD DSNNSGAGNK SQAAGPSASA NDGNARPLFA WPVAPIPFNC SCCHVLREII  120
YCNGTNTKKL EIHGRLGMIC HAVLEDLQNV NRNSSSNQYQ MFDFCKKSIE DVKQFLMKYC  180
LEQNIAGYVM VPDPLATYYE ALCVGLEWDD DDVLLDDLNF QPSPTNSGGA RPMNEPEATR  240
PTHKVSLAAQ RERAGKLTLN ELGRYFNLPI EEAARRLNLC PTVLKKICRR DGMNRWPHRK  300
VKSLQKQISS LRASLESNIN AEARANARAE IDRLEQELTN VCRGVTLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809170.1	0.0	PREDICTED: uncharacterized protein LOC108982295
TrEMBL	A0A2I4DPU4	0.0	A0A2I4DPU4_JUGRE; uncharacterized protein LOC108982295
STRING	XP_006474671.1	1e-111	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-13	NIN like protein 7